Hb_007416_120

Information

Type -
Description -
Location Contig7416: 78740-82890
Sequence    

Annotation

kegg
ID rcu:RCOM_0919480
description arginine/serine-rich splicing factor, putative
nr
ID XP_002515364.1
description arginine/serine-rich splicing factor, putative [Ricinus communis]
swissprot
ID Q69KL9
description Serine/arginine-rich splicing factor RSZ21A OS=Oryza sativa subsp. japonica GN=RSZ21A PE=2 SV=1
trembl
ID B9RNP5
description Arginine/serine-rich splicing factor, putative OS=Ricinus communis GN=RCOM_0919480 PE=4 SV=1
Gene Ontology
ID GO:0000166
description splicing factor rszp22 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56420: 78711-79934 , PASA_asmbl_56421: 80165-82889 , PASA_asmbl_56422: 80302-81901 , PASA_asmbl_56423: 80165-82889
cDNA
(Sanger)
(ID:Location)		 010_L02.ab1: 80420-82887 , 029_K11.ab1: 81239-82886 , 049_B12.ab1: 81214-82885

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007416_120 0.0 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
2 Hb_001671_100 0.0391040995 - - glycine-rich RNA-binding family protein [Populus trichocarpa]
3 Hb_001876_050 0.0431456314 - - hypothetical protein JCGZ_01286 [Jatropha curcas]
4 Hb_004324_130 0.0598331378 - - polypyrimidine tract binding protein, putative [Ricinus communis]
5 Hb_001999_310 0.0604447668 - - PREDICTED: lysosomal beta glucosidase-like [Jatropha curcas]
6 Hb_000181_400 0.0615030064 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 25 isoform X2 [Jatropha curcas]
7 Hb_000111_290 0.0634859546 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
8 Hb_002456_010 0.065398591 - - PREDICTED: protein kinase and PP2C-like domain-containing protein isoform X2 [Jatropha curcas]
9 Hb_000504_070 0.068296057 - - PREDICTED: pescadillo homolog isoform X1 [Jatropha curcas]
10 Hb_003294_070 0.0714497294 - - hypothetical protein RCOM_1714550 [Ricinus communis]
11 Hb_000078_120 0.0726150067 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
12 Hb_029243_030 0.0740366065 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
13 Hb_004567_090 0.0746271449 - - PREDICTED: GPI transamidase component PIG-T [Jatropha curcas]
14 Hb_000392_430 0.075467673 - - PREDICTED: uncharacterized protein LOC105640501 [Jatropha curcas]
15 Hb_002400_410 0.0761215351 - - PREDICTED: topless-related protein 1-like [Jatropha curcas]
16 Hb_006831_140 0.0766805396 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
17 Hb_003465_030 0.0769681865 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001314_050 0.0771565343 - - PREDICTED: eukaryotic translation initiation factor 2 subunit alpha-like [Jatropha curcas]
19 Hb_000556_120 0.0780843905 - - Spastin, putative [Ricinus communis]
20 Hb_000920_300 0.0783649956 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_007416_120 Hb_007416_120 Hb_001671_100 Hb_001671_100 Hb_007416_120--Hb_001671_100 Hb_001876_050 Hb_001876_050 Hb_007416_120--Hb_001876_050 Hb_004324_130 Hb_004324_130 Hb_007416_120--Hb_004324_130 Hb_001999_310 Hb_001999_310 Hb_007416_120--Hb_001999_310 Hb_000181_400 Hb_000181_400 Hb_007416_120--Hb_000181_400 Hb_000111_290 Hb_000111_290 Hb_007416_120--Hb_000111_290 Hb_001671_100--Hb_001876_050 Hb_001671_100--Hb_001999_310 Hb_002232_360 Hb_002232_360 Hb_001671_100--Hb_002232_360 Hb_000392_430 Hb_000392_430 Hb_001671_100--Hb_000392_430 Hb_001314_050 Hb_001314_050 Hb_001671_100--Hb_001314_050 Hb_001876_050--Hb_004324_130 Hb_001876_050--Hb_001999_310 Hb_006831_140 Hb_006831_140 Hb_001876_050--Hb_006831_140 Hb_002456_010 Hb_002456_010 Hb_001876_050--Hb_002456_010 Hb_004324_130--Hb_000181_400 Hb_004324_130--Hb_000111_290 Hb_008725_230 Hb_008725_230 Hb_004324_130--Hb_008725_230 Hb_004324_130--Hb_006831_140 Hb_027073_020 Hb_027073_020 Hb_001999_310--Hb_027073_020 Hb_000614_240 Hb_000614_240 Hb_001999_310--Hb_000614_240 Hb_001500_140 Hb_001500_140 Hb_001999_310--Hb_001500_140 Hb_029243_030 Hb_029243_030 Hb_001999_310--Hb_029243_030 Hb_000907_110 Hb_000907_110 Hb_000181_400--Hb_000907_110 Hb_003294_070 Hb_003294_070 Hb_000181_400--Hb_003294_070 Hb_000181_400--Hb_000111_290 Hb_000181_400--Hb_001876_050 Hb_001417_030 Hb_001417_030 Hb_000111_290--Hb_001417_030 Hb_000111_290--Hb_002456_010 Hb_003913_070 Hb_003913_070 Hb_000111_290--Hb_003913_070 Hb_000111_290--Hb_000614_240 Hb_000111_290--Hb_001999_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.7637 19.9753 14.3423 19.8498 14.6965 20.3155
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.8509 24.0813 20.5903 33.6169 20.2331

CAGE analysis