Hb_007416_150

Information

Type -
Description -
Location Contig7416: 97334-98530
Sequence    

Annotation

kegg
ID rcu:RCOM_2005550
description sarcosine oxidase, putative (EC:1.5.3.1)
nr
ID XP_002535101.1
description sarcosine oxidase, putative [Ricinus communis]
swissprot
ID Q9SJA7
description Probable sarcosine oxidase OS=Arabidopsis thaliana GN=At2g24580 PE=2 SV=1
trembl
ID B9TA32
description Sarcosine oxidase, putative OS=Ricinus communis GN=RCOM_2005550 PE=4 SV=1
Gene Ontology
ID GO:0008115
description probable sarcosine oxidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56425: 97626-98678
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007416_150 0.0 - - sarcosine oxidase, putative [Ricinus communis]
2 Hb_001248_030 0.0930121291 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_002304_140 0.1521439226 - - ring finger protein, putative [Ricinus communis]
4 Hb_011970_040 0.1576550719 - - conserved hypothetical protein [Ricinus communis]
5 Hb_009823_010 0.1608719275 - - PREDICTED: uncharacterized protein LOC105633096 [Jatropha curcas]
6 Hb_004195_110 0.1663507492 - - hypothetical protein JCGZ_24010 [Jatropha curcas]
7 Hb_003576_050 0.1672925548 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
8 Hb_000638_090 0.1675217599 - - ABC transporter family protein [Hevea brasiliensis]
9 Hb_001951_030 0.1725564142 - - hypothetical protein JCGZ_04584 [Jatropha curcas]
10 Hb_002030_170 0.1741254934 - - PREDICTED: calcium-transporting ATPase 1-like [Jatropha curcas]
11 Hb_001408_050 0.1762629888 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000521_300 0.1777489535 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
13 Hb_011618_040 0.1786899399 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007919_040 0.1795351499 - - PREDICTED: protein LYK5 [Jatropha curcas]
15 Hb_001514_210 0.1827826435 - - hypothetical protein VITISV_012133 [Vitis vinifera]
16 Hb_004657_040 0.1829796206 transcription factor TF Family: WRKY WRKY transcription factor 15 family protein [Populus trichocarpa]
17 Hb_000098_310 0.1838930919 - - RecName: Full=Anthocyanidin 3-O-glucosyltransferase 1; AltName: Full=Flavonol 3-O-glucosyltransferase 1; AltName: Full=UDP-glucose flavonoid 3-O-glucosyltransferase 1 [Manihot esculenta]
18 Hb_001252_040 0.1872361556 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
19 Hb_000670_110 0.1882986255 - - l-asparaginase, putative [Ricinus communis]
20 Hb_001842_060 0.1887591158 desease resistance Gene Name: ABC_trans_N hypothetical protein JCGZ_10908 [Jatropha curcas]

Gene co-expression network

sample Hb_007416_150 Hb_007416_150 Hb_001248_030 Hb_001248_030 Hb_007416_150--Hb_001248_030 Hb_002304_140 Hb_002304_140 Hb_007416_150--Hb_002304_140 Hb_011970_040 Hb_011970_040 Hb_007416_150--Hb_011970_040 Hb_009823_010 Hb_009823_010 Hb_007416_150--Hb_009823_010 Hb_004195_110 Hb_004195_110 Hb_007416_150--Hb_004195_110 Hb_003576_050 Hb_003576_050 Hb_007416_150--Hb_003576_050 Hb_001248_030--Hb_009823_010 Hb_001248_030--Hb_003576_050 Hb_001408_050 Hb_001408_050 Hb_001248_030--Hb_001408_050 Hb_000638_090 Hb_000638_090 Hb_001248_030--Hb_000638_090 Hb_001248_030--Hb_002304_140 Hb_002304_140--Hb_004195_110 Hb_002304_140--Hb_009823_010 Hb_000165_210 Hb_000165_210 Hb_002304_140--Hb_000165_210 Hb_000098_310 Hb_000098_310 Hb_002304_140--Hb_000098_310 Hb_003031_030 Hb_003031_030 Hb_011970_040--Hb_003031_030 Hb_000670_110 Hb_000670_110 Hb_011970_040--Hb_000670_110 Hb_001514_210 Hb_001514_210 Hb_011970_040--Hb_001514_210 Hb_002783_320 Hb_002783_320 Hb_011970_040--Hb_002783_320 Hb_001863_460 Hb_001863_460 Hb_011970_040--Hb_001863_460 Hb_011970_040--Hb_001248_030 Hb_000976_440 Hb_000976_440 Hb_009823_010--Hb_000976_440 Hb_009823_010--Hb_003576_050 Hb_009823_010--Hb_001408_050 Hb_000181_160 Hb_000181_160 Hb_009823_010--Hb_000181_160 Hb_009823_010--Hb_000638_090 Hb_009823_010--Hb_000098_310 Hb_004195_110--Hb_000670_110 Hb_004195_110--Hb_001248_030 Hb_004657_040 Hb_004657_040 Hb_004195_110--Hb_004657_040 Hb_004195_110--Hb_000181_160 Hb_003517_020 Hb_003517_020 Hb_003576_050--Hb_003517_020 Hb_003576_050--Hb_001408_050 Hb_000313_370 Hb_000313_370 Hb_003576_050--Hb_000313_370 Hb_000928_040 Hb_000928_040 Hb_003576_050--Hb_000928_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.19617 19.5523 3.41669 2.55254 1.00352 1.06639
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.18007 0.800226 1.19076 30.801 3.11305

CAGE analysis