Hb_007416_180

Information

Type -
Description -
Location Contig7416: 118077-120653
Sequence    

Annotation

kegg
ID rcu:RCOM_0919160
description protein binding protein, putative
nr
ID XP_012076350.1
description PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
swissprot
ID Q9LZD3
description Exocyst complex component EXO70A1 OS=Arabidopsis thaliana GN=EXO70A1 PE=1 SV=1
trembl
ID A0A067KB50
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07027 PE=4 SV=1
Gene Ontology
ID GO:0000145
description exocyst complex component exo70a1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56434: 118096-118342
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007416_180 0.0 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
2 Hb_000538_270 0.0523719334 - - PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]
3 Hb_031527_040 0.0580081361 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
4 Hb_004684_010 0.0598468397 - - PREDICTED: triacylglycerol lipase SDP1 [Jatropha curcas]
5 Hb_000181_070 0.0605406712 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_001248_060 0.0625253333 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001409_020 0.0635379066 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]
8 Hb_001242_060 0.0637044241 - - PREDICTED: uncharacterized protein LOC105139508 [Populus euphratica]
9 Hb_013399_100 0.0640072948 - - conserved hypothetical protein [Ricinus communis]
10 Hb_011491_010 0.0643781567 - - Protein YME1, putative [Ricinus communis]
11 Hb_167498_010 0.0648426283 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
12 Hb_015807_070 0.0658219676 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
13 Hb_001595_030 0.0670999195 - - PREDICTED: nuclear inhibitor of protein phosphatase 1 isoform X1 [Jatropha curcas]
14 Hb_000125_170 0.0684558092 transcription factor TF Family: mTERF hypothetical protein VITISV_028994 [Vitis vinifera]
15 Hb_003052_140 0.0688403156 - - s-adenosylmethionine decarboxylase, putative [Ricinus communis]
16 Hb_010618_010 0.069385614 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
17 Hb_001818_070 0.0704303739 - - carbon catabolite repressor protein, putative [Ricinus communis]
18 Hb_000780_230 0.0705273743 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
19 Hb_000563_320 0.0705686381 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
20 Hb_003058_190 0.0707418431 - - PREDICTED: uncharacterized protein LOC105628951 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007416_180 Hb_007416_180 Hb_000538_270 Hb_000538_270 Hb_007416_180--Hb_000538_270 Hb_031527_040 Hb_031527_040 Hb_007416_180--Hb_031527_040 Hb_004684_010 Hb_004684_010 Hb_007416_180--Hb_004684_010 Hb_000181_070 Hb_000181_070 Hb_007416_180--Hb_000181_070 Hb_001248_060 Hb_001248_060 Hb_007416_180--Hb_001248_060 Hb_001409_020 Hb_001409_020 Hb_007416_180--Hb_001409_020 Hb_000757_060 Hb_000757_060 Hb_000538_270--Hb_000757_060 Hb_002686_030 Hb_002686_030 Hb_000538_270--Hb_002686_030 Hb_000289_060 Hb_000289_060 Hb_000538_270--Hb_000289_060 Hb_001005_190 Hb_001005_190 Hb_000538_270--Hb_001005_190 Hb_001157_040 Hb_001157_040 Hb_000538_270--Hb_001157_040 Hb_001242_060 Hb_001242_060 Hb_031527_040--Hb_001242_060 Hb_000563_320 Hb_000563_320 Hb_031527_040--Hb_000563_320 Hb_000016_250 Hb_000016_250 Hb_031527_040--Hb_000016_250 Hb_000099_080 Hb_000099_080 Hb_031527_040--Hb_000099_080 Hb_031527_040--Hb_001157_040 Hb_002311_040 Hb_002311_040 Hb_004684_010--Hb_002311_040 Hb_003464_060 Hb_003464_060 Hb_004684_010--Hb_003464_060 Hb_000768_040 Hb_000768_040 Hb_004684_010--Hb_000768_040 Hb_015807_070 Hb_015807_070 Hb_004684_010--Hb_015807_070 Hb_004724_060 Hb_004724_060 Hb_004684_010--Hb_004724_060 Hb_000125_170 Hb_000125_170 Hb_000181_070--Hb_000125_170 Hb_000512_060 Hb_000512_060 Hb_000181_070--Hb_000512_060 Hb_000230_120 Hb_000230_120 Hb_000181_070--Hb_000230_120 Hb_000181_070--Hb_031527_040 Hb_007532_030 Hb_007532_030 Hb_000181_070--Hb_007532_030 Hb_010618_010 Hb_010618_010 Hb_001248_060--Hb_010618_010 Hb_001248_060--Hb_001409_020 Hb_011995_010 Hb_011995_010 Hb_001248_060--Hb_011995_010 Hb_001248_060--Hb_000289_060 Hb_015934_040 Hb_015934_040 Hb_001248_060--Hb_015934_040 Hb_001408_040 Hb_001408_040 Hb_001248_060--Hb_001408_040 Hb_001409_020--Hb_010618_010 Hb_013399_100 Hb_013399_100 Hb_001409_020--Hb_013399_100 Hb_167498_010 Hb_167498_010 Hb_001409_020--Hb_167498_010 Hb_008406_200 Hb_008406_200 Hb_001409_020--Hb_008406_200 Hb_007576_110 Hb_007576_110 Hb_001409_020--Hb_007576_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.6058 12.4937 5.75962 6.97511 10.368 11.8531
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.89716 11.2243 13.2795 7.23697 6.91706

CAGE analysis