Hb_007416_200

Information

Type -
Description -
Location Contig7416: 127075-127950
Sequence    

Annotation

kegg
ID pop:POPTR_0018s03500g
description POPTRDRAFT_809187; hypothetical protein
nr
ID XP_012076348.1
description PREDICTED: putative peptidyl-tRNA hydrolase PTRHD1 [Jatropha curcas]
swissprot
ID Q3SZ85
description Putative peptidyl-tRNA hydrolase PTRHD1 OS=Bos taurus GN=PTRHD1 PE=2 SV=2
trembl
ID A0A067KNR2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07025 PE=4 SV=1
Gene Ontology
ID GO:0004045
description peptidyl-trna hydrolase ptrhd1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56437: 127121-127906
cDNA
(Sanger)
(ID:Location)		 001_J13.ab1: 127172-127906 , 011_E02.ab1: 127169-127906 , 014_C01.ab1: 127155-127900 , 034_N23.ab1: 127172-127906 , 045_O18.ab1: 127171-127900 , 050_F17.ab1: 127174-127896 , 052_L23.ab1: 127121-127896

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007416_200 0.0 - - PREDICTED: putative peptidyl-tRNA hydrolase PTRHD1 [Jatropha curcas]
2 Hb_003813_200 0.0609758349 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
3 Hb_000093_130 0.088503429 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
4 Hb_000684_300 0.0897075349 transcription factor TF Family: NF-YB hypothetical protein CICLE_v10012920mg [Citrus clementina]
5 Hb_005333_020 0.1084187355 - - PREDICTED: protein CutA, chloroplastic [Jatropha curcas]
6 Hb_001956_050 0.1138837491 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]
7 Hb_006588_090 0.1170163005 - - PREDICTED: uncharacterized protein At4g28440 [Jatropha curcas]
8 Hb_000692_170 0.1208707758 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
9 Hb_074683_020 0.126584301 - - PREDICTED: 60S ribosomal protein L27-3 [Jatropha curcas]
10 Hb_000504_170 0.1274102987 - - hypothetical protein B456_006G033900 [Gossypium raimondii]
11 Hb_001227_110 0.1275902009 - - U2 snrnp auxiliary factor, small subunit, putative [Ricinus communis]
12 Hb_001473_190 0.1283557643 - - 50S ribosomal protein L20 [Hevea brasiliensis]
13 Hb_000025_750 0.1306262058 - - PREDICTED: nuclear speckle splicing regulatory protein 1-like [Jatropha curcas]
14 Hb_011930_010 0.130974467 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
15 Hb_000465_310 0.1364091435 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000740_070 0.1415218586 - - -
17 Hb_000116_570 0.1421799492 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
18 Hb_183510_010 0.1435665967 - - PREDICTED: RPM1-interacting protein 4-like isoform X2 [Jatropha curcas]
19 Hb_001663_110 0.1452960518 - - RNA binding protein, putative [Ricinus communis]
20 Hb_000264_060 0.148961168 - - PREDICTED: RNA polymerase-associated protein RTF1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_007416_200 Hb_007416_200 Hb_003813_200 Hb_003813_200 Hb_007416_200--Hb_003813_200 Hb_000093_130 Hb_000093_130 Hb_007416_200--Hb_000093_130 Hb_000684_300 Hb_000684_300 Hb_007416_200--Hb_000684_300 Hb_005333_020 Hb_005333_020 Hb_007416_200--Hb_005333_020 Hb_001956_050 Hb_001956_050 Hb_007416_200--Hb_001956_050 Hb_006588_090 Hb_006588_090 Hb_007416_200--Hb_006588_090 Hb_003813_200--Hb_000093_130 Hb_000692_170 Hb_000692_170 Hb_003813_200--Hb_000692_170 Hb_003813_200--Hb_001956_050 Hb_000025_750 Hb_000025_750 Hb_003813_200--Hb_000025_750 Hb_003813_200--Hb_000684_300 Hb_001227_110 Hb_001227_110 Hb_000093_130--Hb_001227_110 Hb_000116_570 Hb_000116_570 Hb_000093_130--Hb_000116_570 Hb_001473_190 Hb_001473_190 Hb_000093_130--Hb_001473_190 Hb_000093_130--Hb_000025_750 Hb_074683_020 Hb_074683_020 Hb_000093_130--Hb_074683_020 Hb_000684_300--Hb_000093_130 Hb_000684_300--Hb_001473_190 Hb_000684_300--Hb_005333_020 Hb_000684_300--Hb_000116_570 Hb_153150_010 Hb_153150_010 Hb_005333_020--Hb_153150_010 Hb_000465_310 Hb_000465_310 Hb_005333_020--Hb_000465_310 Hb_005147_110 Hb_005147_110 Hb_005333_020--Hb_005147_110 Hb_001975_070 Hb_001975_070 Hb_005333_020--Hb_001975_070 Hb_011930_010 Hb_011930_010 Hb_005333_020--Hb_011930_010 Hb_000640_210 Hb_000640_210 Hb_005333_020--Hb_000640_210 Hb_000714_020 Hb_000714_020 Hb_001956_050--Hb_000714_020 Hb_001956_050--Hb_011930_010 Hb_011609_030 Hb_011609_030 Hb_001956_050--Hb_011609_030 Hb_004137_030 Hb_004137_030 Hb_001956_050--Hb_004137_030 Hb_006588_090--Hb_000465_310 Hb_006588_090--Hb_005333_020 Hb_183510_010 Hb_183510_010 Hb_006588_090--Hb_183510_010 Hb_001720_010 Hb_001720_010 Hb_006588_090--Hb_001720_010 Hb_025048_030 Hb_025048_030 Hb_006588_090--Hb_025048_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
713.073 250.405 125.214 28.2446 398.638 308.389
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
186.103 183.227 93.6487 51.985 11.9276

CAGE analysis