Hb_007416_260

Information

Type -
Description -
Location Contig7416: 150724-153460
Sequence    

Annotation

kegg
ID rcu:RCOM_0918520
description ring finger protein, putative
nr
ID XP_012076340.1
description PREDICTED: E3 ubiquitin-protein ligase RNF12-A-like [Jatropha curcas]
swissprot
ID Q7XTV7
description Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza sativa subsp. japonica GN=HIP1 PE=1 SV=2
trembl
ID A0A067KEL6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07019 PE=4 SV=1
Gene Ontology
ID GO:0005515
description e3 ubiquitin-protein ligase rnf12-a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56439: 149073-153459
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007416_260 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RNF12-A-like [Jatropha curcas]
2 Hb_000815_310 0.0779622757 - - protein kinase, putative [Ricinus communis]
3 Hb_002965_050 0.0846507073 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR2 [Jatropha curcas]
4 Hb_000261_280 0.0879517256 - - BnaA10g23810D [Brassica napus]
5 Hb_000979_140 0.0910311268 - - kinase family protein [Populus trichocarpa]
6 Hb_000137_010 0.0918460285 - - PREDICTED: uncharacterized protein LOC105644349 [Jatropha curcas]
7 Hb_002876_210 0.0929750961 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]
8 Hb_002900_120 0.0931368572 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
9 Hb_003428_090 0.0940415117 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
10 Hb_003540_250 0.0978061518 - - PREDICTED: uncharacterized protein LOC105649465 isoform X2 [Jatropha curcas]
11 Hb_033152_090 0.0983688495 - - PREDICTED: serine/threonine-protein kinase SRK2E isoform X2 [Gossypium raimondii]
12 Hb_000418_050 0.0996343257 - - PREDICTED: uncharacterized protein LOC105636892 [Jatropha curcas]
13 Hb_000956_040 0.1009250606 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
14 Hb_005305_100 0.1009937261 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
15 Hb_003058_140 0.10160979 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000680_120 0.1018402364 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
17 Hb_003777_130 0.1040313964 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]
18 Hb_003725_010 0.1051448261 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
19 Hb_000258_420 0.1061141926 - - sucrose transporter 2A [Hevea brasiliensis]
20 Hb_000156_090 0.1077370157 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007416_260 Hb_007416_260 Hb_000815_310 Hb_000815_310 Hb_007416_260--Hb_000815_310 Hb_002965_050 Hb_002965_050 Hb_007416_260--Hb_002965_050 Hb_000261_280 Hb_000261_280 Hb_007416_260--Hb_000261_280 Hb_000979_140 Hb_000979_140 Hb_007416_260--Hb_000979_140 Hb_000137_010 Hb_000137_010 Hb_007416_260--Hb_000137_010 Hb_002876_210 Hb_002876_210 Hb_007416_260--Hb_002876_210 Hb_003540_250 Hb_003540_250 Hb_000815_310--Hb_003540_250 Hb_003777_130 Hb_003777_130 Hb_000815_310--Hb_003777_130 Hb_033152_090 Hb_033152_090 Hb_000815_310--Hb_033152_090 Hb_000815_310--Hb_002965_050 Hb_000815_310--Hb_002876_210 Hb_000156_090 Hb_000156_090 Hb_002965_050--Hb_000156_090 Hb_002965_050--Hb_002876_210 Hb_002900_120 Hb_002900_120 Hb_002965_050--Hb_002900_120 Hb_060094_010 Hb_060094_010 Hb_002965_050--Hb_060094_010 Hb_000711_010 Hb_000711_010 Hb_002965_050--Hb_000711_010 Hb_000803_180 Hb_000803_180 Hb_000261_280--Hb_000803_180 Hb_000418_050 Hb_000418_050 Hb_000261_280--Hb_000418_050 Hb_000261_280--Hb_003777_130 Hb_000796_120 Hb_000796_120 Hb_000261_280--Hb_000796_120 Hb_000261_280--Hb_033152_090 Hb_004319_050 Hb_004319_050 Hb_000261_280--Hb_004319_050 Hb_001729_020 Hb_001729_020 Hb_000979_140--Hb_001729_020 Hb_000452_030 Hb_000452_030 Hb_000979_140--Hb_000452_030 Hb_004052_110 Hb_004052_110 Hb_000979_140--Hb_004052_110 Hb_000015_090 Hb_000015_090 Hb_000979_140--Hb_000015_090 Hb_000197_180 Hb_000197_180 Hb_000979_140--Hb_000197_180 Hb_000680_120 Hb_000680_120 Hb_000137_010--Hb_000680_120 Hb_000956_040 Hb_000956_040 Hb_000137_010--Hb_000956_040 Hb_000230_460 Hb_000230_460 Hb_000137_010--Hb_000230_460 Hb_000788_030 Hb_000788_030 Hb_000137_010--Hb_000788_030 Hb_005305_100 Hb_005305_100 Hb_000137_010--Hb_005305_100 Hb_004774_090 Hb_004774_090 Hb_000137_010--Hb_004774_090 Hb_002876_210--Hb_002900_120 Hb_002876_210--Hb_000711_010 Hb_002876_210--Hb_000452_030 Hb_002217_090 Hb_002217_090 Hb_002876_210--Hb_002217_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.72063 20.8329 20.1489 14.9076 4.12723 5.57153
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.13964 7.36559 2.94489 7.0192 12.8531

CAGE analysis