Hb_007416_270

Information

Type -
Description -
Location Contig7416: 158813-160066
Sequence    

Annotation

kegg
ID rcu:RCOM_0918500
description hypothetical protein
nr
ID XP_012076339.1
description PREDICTED: uncharacterized protein LOC105637478 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KBD9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07018 PE=4 SV=1
Gene Ontology
ID GO:0070461
description transcriptional adapter 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56440: 158722-160300 , PASA_asmbl_56441: 160616-160856
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007416_270 0.0 - - PREDICTED: uncharacterized protein LOC105637478 [Jatropha curcas]
2 Hb_001002_030 0.0801304959 - - PREDICTED: uncharacterized protein LOC105643537 [Jatropha curcas]
3 Hb_000236_140 0.0804880192 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]
4 Hb_003687_100 0.0890066514 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Jatropha curcas]
5 Hb_000865_060 0.0905776966 transcription factor TF Family: FAR1 hypothetical protein CISIN_1g043648mg [Citrus sinensis]
6 Hb_000479_130 0.0957534466 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39350 [Jatropha curcas]
7 Hb_008695_210 0.0967461002 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
8 Hb_005532_060 0.097594645 - - PREDICTED: pentatricopeptide repeat-containing protein At2g20540-like [Jatropha curcas]
9 Hb_000172_560 0.0980801075 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750 [Jatropha curcas]
10 Hb_006922_030 0.0998437849 - - ubiquitin, putative [Ricinus communis]
11 Hb_005188_090 0.1038326232 - - PREDICTED: phosphatidylinositol 4-kinase gamma 7-like [Jatropha curcas]
12 Hb_002603_160 0.104027199 - - Arginyl-tRNA--protein transferase, putative [Ricinus communis]
13 Hb_001090_050 0.1058873179 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X1 [Jatropha curcas]
14 Hb_005043_010 0.1074535591 - - calcium ion binding protein, putative [Ricinus communis]
15 Hb_011242_040 0.1097790615 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 1 isoform X1 [Jatropha curcas]
16 Hb_001329_300 0.110003197 - - PREDICTED: L-cysteine desulfhydrase [Jatropha curcas]
17 Hb_000614_230 0.1103225711 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
18 Hb_001085_170 0.1109128599 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 2 isoform X1 [Jatropha curcas]
19 Hb_000934_270 0.1124869867 - - PREDICTED: pentatricopeptide repeat-containing protein At3g21470 [Populus euphratica]
20 Hb_007632_220 0.1132124782 - - RNA-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_007416_270 Hb_007416_270 Hb_001002_030 Hb_001002_030 Hb_007416_270--Hb_001002_030 Hb_000236_140 Hb_000236_140 Hb_007416_270--Hb_000236_140 Hb_003687_100 Hb_003687_100 Hb_007416_270--Hb_003687_100 Hb_000865_060 Hb_000865_060 Hb_007416_270--Hb_000865_060 Hb_000479_130 Hb_000479_130 Hb_007416_270--Hb_000479_130 Hb_008695_210 Hb_008695_210 Hb_007416_270--Hb_008695_210 Hb_001002_030--Hb_008695_210 Hb_001002_030--Hb_000865_060 Hb_000907_080 Hb_000907_080 Hb_001002_030--Hb_000907_080 Hb_005532_060 Hb_005532_060 Hb_001002_030--Hb_005532_060 Hb_164926_030 Hb_164926_030 Hb_001002_030--Hb_164926_030 Hb_000236_140--Hb_003687_100 Hb_004128_180 Hb_004128_180 Hb_000236_140--Hb_004128_180 Hb_000236_140--Hb_000479_130 Hb_007075_050 Hb_007075_050 Hb_000236_140--Hb_007075_050 Hb_000172_560 Hb_000172_560 Hb_000236_140--Hb_000172_560 Hb_000635_220 Hb_000635_220 Hb_003687_100--Hb_000635_220 Hb_002496_040 Hb_002496_040 Hb_003687_100--Hb_002496_040 Hb_003687_100--Hb_007075_050 Hb_000343_130 Hb_000343_130 Hb_003687_100--Hb_000343_130 Hb_001090_050 Hb_001090_050 Hb_000865_060--Hb_001090_050 Hb_005188_090 Hb_005188_090 Hb_000865_060--Hb_005188_090 Hb_011242_040 Hb_011242_040 Hb_000865_060--Hb_011242_040 Hb_168773_010 Hb_168773_010 Hb_000865_060--Hb_168773_010 Hb_004306_060 Hb_004306_060 Hb_000479_130--Hb_004306_060 Hb_000934_270 Hb_000934_270 Hb_000479_130--Hb_000934_270 Hb_000479_130--Hb_000172_560 Hb_000479_130--Hb_007075_050 Hb_000614_230 Hb_000614_230 Hb_008695_210--Hb_000614_230 Hb_006915_050 Hb_006915_050 Hb_008695_210--Hb_006915_050 Hb_008695_210--Hb_000907_080 Hb_189003_080 Hb_189003_080 Hb_008695_210--Hb_189003_080 Hb_000754_040 Hb_000754_040 Hb_008695_210--Hb_000754_040 Hb_002006_090 Hb_002006_090 Hb_008695_210--Hb_002006_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.0837 10.7517 4.64785 4.54588 16.2519 24.8861
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.0582 20.7747 54.2012 10.8126 14.8264

CAGE analysis