Hb_007416_280

Information

Type -
Description -
Location Contig7416: 164310-171952
Sequence    

Annotation

kegg
ID rcu:RCOM_0918390
description hypothetical protein
nr
ID XP_002515335.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RNL6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0918390 PE=4 SV=1
Gene Ontology
ID GO:0000776
description centromere protein o isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56442: 164360-171981 , PASA_asmbl_56443: 164492-166275 , PASA_asmbl_56444: 168762-172103
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007416_280 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003092_040 0.043420054 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 isoform X2 [Pyrus x bretschneideri]
3 Hb_004032_150 0.0592515049 - - PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]
4 Hb_002026_180 0.0607915157 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
5 Hb_001489_150 0.0632563298 - - PREDICTED: uncharacterized protein LOC105123623 isoform X2 [Populus euphratica]
6 Hb_019280_040 0.0639257374 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_000618_040 0.0646109055 - - hypothetical protein CICLE_v10027942mg [Citrus clementina]
8 Hb_000953_020 0.0649112646 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
9 Hb_009557_070 0.0653559274 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003766_040 0.0667886916 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_005357_080 0.0670328351 - - PREDICTED: tyrosyl-DNA phosphodiesterase 1 [Jatropha curcas]
12 Hb_000808_270 0.0670954553 - - PREDICTED: lon protease homolog 1, mitochondrial [Jatropha curcas]
13 Hb_005663_060 0.067181155 - - PREDICTED: uncharacterized protein LOC105770600 [Gossypium raimondii]
14 Hb_000030_300 0.0673004367 - - Thioredoxin, putative [Ricinus communis]
15 Hb_032208_090 0.0674502576 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
16 Hb_000510_130 0.0680974268 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
17 Hb_002835_080 0.0694028174 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Jatropha curcas]
18 Hb_000019_030 0.0705481908 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
19 Hb_000329_030 0.0708463627 - - PREDICTED: uncharacterized protein LOC105643133 isoform X1 [Jatropha curcas]
20 Hb_003175_010 0.0713868525 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_007416_280 Hb_007416_280 Hb_003092_040 Hb_003092_040 Hb_007416_280--Hb_003092_040 Hb_004032_150 Hb_004032_150 Hb_007416_280--Hb_004032_150 Hb_002026_180 Hb_002026_180 Hb_007416_280--Hb_002026_180 Hb_001489_150 Hb_001489_150 Hb_007416_280--Hb_001489_150 Hb_019280_040 Hb_019280_040 Hb_007416_280--Hb_019280_040 Hb_000618_040 Hb_000618_040 Hb_007416_280--Hb_000618_040 Hb_005663_060 Hb_005663_060 Hb_003092_040--Hb_005663_060 Hb_000510_130 Hb_000510_130 Hb_003092_040--Hb_000510_130 Hb_007691_030 Hb_007691_030 Hb_003092_040--Hb_007691_030 Hb_032202_190 Hb_032202_190 Hb_003092_040--Hb_032202_190 Hb_003126_050 Hb_003126_050 Hb_003092_040--Hb_003126_050 Hb_004767_100 Hb_004767_100 Hb_004032_150--Hb_004767_100 Hb_001638_170 Hb_001638_170 Hb_004032_150--Hb_001638_170 Hb_000318_290 Hb_000318_290 Hb_004032_150--Hb_000318_290 Hb_148644_010 Hb_148644_010 Hb_004032_150--Hb_148644_010 Hb_004032_150--Hb_001489_150 Hb_000030_300 Hb_000030_300 Hb_002026_180--Hb_000030_300 Hb_002016_110 Hb_002016_110 Hb_002026_180--Hb_002016_110 Hb_000571_120 Hb_000571_120 Hb_002026_180--Hb_000571_120 Hb_003766_040 Hb_003766_040 Hb_002026_180--Hb_003766_040 Hb_189003_080 Hb_189003_080 Hb_002026_180--Hb_189003_080 Hb_005291_030 Hb_005291_030 Hb_001489_150--Hb_005291_030 Hb_003952_070 Hb_003952_070 Hb_001489_150--Hb_003952_070 Hb_000808_270 Hb_000808_270 Hb_001489_150--Hb_000808_270 Hb_001489_150--Hb_001638_170 Hb_000010_330 Hb_000010_330 Hb_019280_040--Hb_000010_330 Hb_010457_030 Hb_010457_030 Hb_019280_040--Hb_010457_030 Hb_003175_010 Hb_003175_010 Hb_019280_040--Hb_003175_010 Hb_002835_080 Hb_002835_080 Hb_019280_040--Hb_002835_080 Hb_002200_080 Hb_002200_080 Hb_019280_040--Hb_002200_080 Hb_003417_020 Hb_003417_020 Hb_019280_040--Hb_003417_020 Hb_000451_010 Hb_000451_010 Hb_000618_040--Hb_000451_010 Hb_005357_080 Hb_005357_080 Hb_000618_040--Hb_005357_080 Hb_008511_130 Hb_008511_130 Hb_000618_040--Hb_008511_130 Hb_000019_030 Hb_000019_030 Hb_000618_040--Hb_000019_030 Hb_000230_560 Hb_000230_560 Hb_000618_040--Hb_000230_560
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.6431 11.5488 10.8212 13.4591 13.518 24.124
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.2031 19.0112 20.0658 13.0336 7.01064

CAGE analysis