Hb_007416_290

Information

Type -
Description -
Location Contig7416: 172519-177839
Sequence    

Annotation

kegg
ID pxb:103953576
description plasma membrane ATPase 4-like
nr
ID XP_009363612.1
description PREDICTED: plasma membrane ATPase 4-like [Pyrus x bretschneideri]
swissprot
ID Q7XPY2
description Plasma membrane ATPase OS=Oryza sativa subsp. japonica GN=Os04g0656100 PE=2 SV=1
trembl
ID A0A067KMC6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07016 PE=3 SV=1
Gene Ontology
ID GO:0016021
description plasma membrane atpase 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56445: 172553-179427
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007416_290 0.0 - - PREDICTED: plasma membrane ATPase 4-like [Pyrus x bretschneideri]
2 Hb_022250_160 0.0858194074 - - respiratory burst oxidase A [Manihot esculenta]
3 Hb_008143_040 0.1162727653 - - Alpha-expansin 4 precursor, putative [Ricinus communis]
4 Hb_009545_030 0.1178167035 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
5 Hb_007134_030 0.1256056733 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
6 Hb_004079_100 0.1291079367 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
7 Hb_000946_070 0.1297434809 - - chaperone protein DNAj, putative [Ricinus communis]
8 Hb_001159_170 0.1334409592 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
9 Hb_001677_090 0.1349897297 - - PREDICTED: CASP-like protein 5B2 [Jatropha curcas]
10 Hb_004324_030 0.1359656035 - - PREDICTED: probable protein phosphatase 2C 8 [Jatropha curcas]
11 Hb_003879_020 0.137838691 - - PREDICTED: MATE efflux family protein 1-like [Jatropha curcas]
12 Hb_008566_080 0.1392943453 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
13 Hb_007590_100 0.1393321269 - - PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]
14 Hb_000970_020 0.1394616526 - - hypothetical protein POPTR_0005s19050g [Populus trichocarpa]
15 Hb_002448_020 0.1447077984 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
16 Hb_003411_020 0.1450414925 - - alpha-glucosidase, putative [Ricinus communis]
17 Hb_117639_010 0.1473518385 - - hypothetical protein B456_013G070100 [Gossypium raimondii]
18 Hb_019026_050 0.148455764 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002739_040 0.150820738 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
20 Hb_007138_030 0.1520421506 - - PREDICTED: putative disease resistance protein At4g11170 [Jatropha curcas]

Gene co-expression network

sample Hb_007416_290 Hb_007416_290 Hb_022250_160 Hb_022250_160 Hb_007416_290--Hb_022250_160 Hb_008143_040 Hb_008143_040 Hb_007416_290--Hb_008143_040 Hb_009545_030 Hb_009545_030 Hb_007416_290--Hb_009545_030 Hb_007134_030 Hb_007134_030 Hb_007416_290--Hb_007134_030 Hb_004079_100 Hb_004079_100 Hb_007416_290--Hb_004079_100 Hb_000946_070 Hb_000946_070 Hb_007416_290--Hb_000946_070 Hb_022250_160--Hb_004079_100 Hb_001040_200 Hb_001040_200 Hb_022250_160--Hb_001040_200 Hb_007386_030 Hb_007386_030 Hb_022250_160--Hb_007386_030 Hb_008566_080 Hb_008566_080 Hb_022250_160--Hb_008566_080 Hb_000594_160 Hb_000594_160 Hb_022250_160--Hb_000594_160 Hb_008143_040--Hb_009545_030 Hb_008143_040--Hb_007134_030 Hb_117639_010 Hb_117639_010 Hb_008143_040--Hb_117639_010 Hb_000057_100 Hb_000057_100 Hb_008143_040--Hb_000057_100 Hb_000115_250 Hb_000115_250 Hb_008143_040--Hb_000115_250 Hb_001159_170 Hb_001159_170 Hb_009545_030--Hb_001159_170 Hb_004324_030 Hb_004324_030 Hb_009545_030--Hb_004324_030 Hb_009545_030--Hb_007134_030 Hb_007138_030 Hb_007138_030 Hb_009545_030--Hb_007138_030 Hb_187959_010 Hb_187959_010 Hb_007134_030--Hb_187959_010 Hb_004032_110 Hb_004032_110 Hb_007134_030--Hb_004032_110 Hb_001439_010 Hb_001439_010 Hb_007134_030--Hb_001439_010 Hb_011129_020 Hb_011129_020 Hb_004079_100--Hb_011129_020 Hb_003411_020 Hb_003411_020 Hb_004079_100--Hb_003411_020 Hb_004079_100--Hb_008566_080 Hb_000120_320 Hb_000120_320 Hb_004079_100--Hb_000120_320 Hb_004079_100--Hb_000594_160 Hb_000946_070--Hb_000057_100 Hb_001677_090 Hb_001677_090 Hb_000946_070--Hb_001677_090 Hb_029510_120 Hb_029510_120 Hb_000946_070--Hb_029510_120 Hb_000946_070--Hb_117639_010 Hb_000946_070--Hb_022250_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.166875 14.0134 21.1159 59.0586 0.177618 0.186714
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.35654 5.72828 1.76599 44.2401 27.6498

CAGE analysis