Hb_007416_300

Information

Type -
Description -
Location Contig7416: 186755-198367
Sequence    

Annotation

kegg
ID rcu:RCOM_0204710
description jun activation domain binding protein, putative
nr
ID XP_012076336.1
description PREDICTED: COP9 signalosome complex subunit 5b-like [Jatropha curcas]
swissprot
ID Q9FVU9
description COP9 signalosome complex subunit 5a OS=Arabidopsis thaliana GN=CSN5A PE=1 SV=1
trembl
ID A0A067KNQ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07015 PE=4 SV=1
Gene Ontology
ID GO:0005515
description cop9 signalosome complex subunit 5b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56446: 186873-190905 , PASA_asmbl_56447: 191652-195387 , PASA_asmbl_56449: 192867-197194
cDNA
(Sanger)
(ID:Location)		 020_I14.ab1: 189599-190850 , 052_B09.ab1: 193643-195369

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007416_300 0.0 - - PREDICTED: COP9 signalosome complex subunit 5b-like [Jatropha curcas]
2 Hb_010381_090 0.0418656013 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
3 Hb_001051_080 0.0577889188 - - hypothetical protein EUGRSUZ_B02508 [Eucalyptus grandis]
4 Hb_002872_030 0.0580998595 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
5 Hb_003549_150 0.0587313351 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
6 Hb_033642_030 0.0612583062 - - PREDICTED: G-protein coupled receptor 1 isoform X1 [Jatropha curcas]
7 Hb_008453_140 0.0630598442 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
8 Hb_143395_010 0.0635313442 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
9 Hb_002078_110 0.0684272102 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
10 Hb_003964_070 0.0702204039 - - hypothetical protein JCGZ_15695 [Jatropha curcas]
11 Hb_003185_010 0.0708489258 - - PREDICTED: V-type proton ATPase subunit c''1 [Jatropha curcas]
12 Hb_000317_470 0.0716095059 - - PREDICTED: CCR4-NOT transcription complex subunit 11 [Jatropha curcas]
13 Hb_120410_010 0.0721622071 - - PREDICTED: vesicle-associated membrane protein 727-like [Solanum tuberosum]
14 Hb_131646_010 0.0736685953 - - protein arginine n-methyltransferase, putative [Ricinus communis]
15 Hb_002686_250 0.0737885996 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Jatropha curcas]
16 Hb_002311_180 0.074421852 - - drought-responsive family protein [Populus trichocarpa]
17 Hb_022132_050 0.0764141337 - - GTP binding protein, putative [Ricinus communis]
18 Hb_003813_040 0.0773062875 - - PREDICTED: elongator complex protein 5 [Jatropha curcas]
19 Hb_000484_030 0.077580991 - - PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 3 [Jatropha curcas]
20 Hb_006620_020 0.078058146 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]

Gene co-expression network

sample Hb_007416_300 Hb_007416_300 Hb_010381_090 Hb_010381_090 Hb_007416_300--Hb_010381_090 Hb_001051_080 Hb_001051_080 Hb_007416_300--Hb_001051_080 Hb_002872_030 Hb_002872_030 Hb_007416_300--Hb_002872_030 Hb_003549_150 Hb_003549_150 Hb_007416_300--Hb_003549_150 Hb_033642_030 Hb_033642_030 Hb_007416_300--Hb_033642_030 Hb_008453_140 Hb_008453_140 Hb_007416_300--Hb_008453_140 Hb_010381_090--Hb_002872_030 Hb_010381_090--Hb_008453_140 Hb_120410_010 Hb_120410_010 Hb_010381_090--Hb_120410_010 Hb_001142_030 Hb_001142_030 Hb_010381_090--Hb_001142_030 Hb_010381_090--Hb_003549_150 Hb_004631_180 Hb_004631_180 Hb_001051_080--Hb_004631_180 Hb_000120_430 Hb_000120_430 Hb_001051_080--Hb_000120_430 Hb_033834_030 Hb_033834_030 Hb_001051_080--Hb_033834_030 Hb_000309_040 Hb_000309_040 Hb_001051_080--Hb_000309_040 Hb_001051_080--Hb_003549_150 Hb_027428_010 Hb_027428_010 Hb_002872_030--Hb_027428_010 Hb_002872_030--Hb_008453_140 Hb_006588_070 Hb_006588_070 Hb_002872_030--Hb_006588_070 Hb_073973_130 Hb_073973_130 Hb_002872_030--Hb_073973_130 Hb_000603_150 Hb_000603_150 Hb_003549_150--Hb_000603_150 Hb_000617_100 Hb_000617_100 Hb_003549_150--Hb_000617_100 Hb_001408_040 Hb_001408_040 Hb_003549_150--Hb_001408_040 Hb_000789_310 Hb_000789_310 Hb_033642_030--Hb_000789_310 Hb_002272_130 Hb_002272_130 Hb_033642_030--Hb_002272_130 Hb_002947_030 Hb_002947_030 Hb_033642_030--Hb_002947_030 Hb_000200_380 Hb_000200_380 Hb_033642_030--Hb_000200_380 Hb_000060_090 Hb_000060_090 Hb_033642_030--Hb_000060_090 Hb_008453_140--Hb_120410_010 Hb_003125_120 Hb_003125_120 Hb_008453_140--Hb_003125_120 Hb_008453_140--Hb_001142_030 Hb_000220_010 Hb_000220_010 Hb_008453_140--Hb_000220_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.1192 15.3198 20.6498 18.8365 23.8356 21.8719
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.2687 17.0958 14.8608 13.1235 10.0908

CAGE analysis