Hb_007416_320

Information

Type -
Description -
Location Contig7416: 203102-205670
Sequence    

Annotation

kegg
ID rcu:RCOM_0204850
description hypothetical protein
nr
ID XP_002527964.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SPP5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0204850 PE=4 SV=1
Gene Ontology
ID GO:0005622
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56451: 202200-205559
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007416_320 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005618_170 0.0592371266 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
3 Hb_001633_210 0.0641360666 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
4 Hb_000058_060 0.0654712149 - - PREDICTED: protein-tyrosine-phosphatase IBR5 [Jatropha curcas]
5 Hb_000062_220 0.0662002236 - - BnaC02g35870D [Brassica napus]
6 Hb_000876_070 0.0669448728 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
7 Hb_000120_470 0.0673740999 - - hypothetical protein VITISV_017372 [Vitis vinifera]
8 Hb_001758_100 0.0700903333 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
9 Hb_002061_040 0.0718135394 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
10 Hb_011214_020 0.0732375021 - - PREDICTED: RNA-binding protein 5 isoform X1 [Jatropha curcas]
11 Hb_005846_040 0.0733483995 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Populus euphratica]
12 Hb_002631_060 0.0733613189 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
13 Hb_086639_030 0.0742357883 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
14 Hb_000069_420 0.0751612924 - - Beclin-1, putative [Ricinus communis]
15 Hb_004994_140 0.0753313167 - - PREDICTED: digalactosyldiacylglycerol synthase 2, chloroplastic [Jatropha curcas]
16 Hb_000250_060 0.0754023715 - - PREDICTED: 28S ribosomal protein S29, mitochondrial [Jatropha curcas]
17 Hb_004907_110 0.0755811905 - - PREDICTED: BTB/POZ and MATH domain-containing protein 3 isoform X1 [Jatropha curcas]
18 Hb_001226_040 0.0758176458 - - protein with unknown function [Ricinus communis]
19 Hb_005779_060 0.0759639802 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
20 Hb_000009_460 0.0760060547 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007416_320 Hb_007416_320 Hb_005618_170 Hb_005618_170 Hb_007416_320--Hb_005618_170 Hb_001633_210 Hb_001633_210 Hb_007416_320--Hb_001633_210 Hb_000058_060 Hb_000058_060 Hb_007416_320--Hb_000058_060 Hb_000062_220 Hb_000062_220 Hb_007416_320--Hb_000062_220 Hb_000876_070 Hb_000876_070 Hb_007416_320--Hb_000876_070 Hb_000120_470 Hb_000120_470 Hb_007416_320--Hb_000120_470 Hb_005305_080 Hb_005305_080 Hb_005618_170--Hb_005305_080 Hb_004254_120 Hb_004254_120 Hb_005618_170--Hb_004254_120 Hb_005618_170--Hb_000876_070 Hb_032202_190 Hb_032202_190 Hb_005618_170--Hb_032202_190 Hb_000085_050 Hb_000085_050 Hb_005618_170--Hb_000085_050 Hb_000250_060 Hb_000250_060 Hb_001633_210--Hb_000250_060 Hb_000840_250 Hb_000840_250 Hb_001633_210--Hb_000840_250 Hb_010812_120 Hb_010812_120 Hb_001633_210--Hb_010812_120 Hb_000614_250 Hb_000614_250 Hb_001633_210--Hb_000614_250 Hb_000185_030 Hb_000185_030 Hb_001633_210--Hb_000185_030 Hb_000297_010 Hb_000297_010 Hb_001633_210--Hb_000297_010 Hb_000009_460 Hb_000009_460 Hb_000058_060--Hb_000009_460 Hb_005289_030 Hb_005289_030 Hb_000058_060--Hb_005289_030 Hb_159809_020 Hb_159809_020 Hb_000058_060--Hb_159809_020 Hb_002759_060 Hb_002759_060 Hb_000058_060--Hb_002759_060 Hb_027073_040 Hb_027073_040 Hb_000058_060--Hb_027073_040 Hb_005779_060 Hb_005779_060 Hb_000062_220--Hb_005779_060 Hb_000062_220--Hb_000876_070 Hb_012019_010 Hb_012019_010 Hb_000062_220--Hb_012019_010 Hb_010422_060 Hb_010422_060 Hb_000062_220--Hb_010422_060 Hb_008725_260 Hb_008725_260 Hb_000062_220--Hb_008725_260 Hb_002739_100 Hb_002739_100 Hb_000876_070--Hb_002739_100 Hb_000876_070--Hb_005779_060 Hb_002046_180 Hb_002046_180 Hb_000876_070--Hb_002046_180 Hb_000876_070--Hb_032202_190 Hb_007691_030 Hb_007691_030 Hb_000876_070--Hb_007691_030 Hb_001758_100 Hb_001758_100 Hb_000120_470--Hb_001758_100 Hb_008900_010 Hb_008900_010 Hb_000120_470--Hb_008900_010 Hb_005054_350 Hb_005054_350 Hb_000120_470--Hb_005054_350 Hb_058999_020 Hb_058999_020 Hb_000120_470--Hb_058999_020 Hb_000120_470--Hb_000058_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.4855 22.8232 12.8784 20.7362 21.3116 26.1865
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.8133 47.2759 41.888 27.9043 14.3355

CAGE analysis