Hb_007416_330

Information

Type -
Description -
Location Contig7416: 206772-213744
Sequence    

Annotation

kegg
ID pxb:103931145
description HBS1-like protein
nr
ID XP_012076329.1
description PREDICTED: elongation factor 1-alpha isoform X1 [Jatropha curcas]
swissprot
ID Q9Y450
description HBS1-like protein OS=Homo sapiens GN=HBS1L PE=1 SV=1
trembl
ID D7TU45
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0017g00530 PE=4 SV=1
Gene Ontology
ID GO:0003924
description hbs1-like protein isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56454: 206800-212957 , PASA_asmbl_56455: 209960-210057 , PASA_asmbl_56456: 211822-211996 , PASA_asmbl_56457: 213084-213660
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007416_330 0.0 - - PREDICTED: elongation factor 1-alpha isoform X1 [Jatropha curcas]
2 Hb_007894_110 0.0605864352 - - Heat-shock protein 105 kDa, putative [Ricinus communis]
3 Hb_006017_010 0.064147479 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
4 Hb_001221_080 0.0693249712 - - PREDICTED: conserved oligomeric Golgi complex subunit 2 isoform X2 [Jatropha curcas]
5 Hb_109980_010 0.0726889837 - - PREDICTED: uncharacterized protein LOC105647182 isoform X1 [Jatropha curcas]
6 Hb_001408_140 0.0761440394 - - hypothetical protein JCGZ_00234 [Jatropha curcas]
7 Hb_114310_090 0.0766299816 - - PREDICTED: low-temperature-induced cysteine proteinase [Jatropha curcas]
8 Hb_002013_020 0.0779313234 - - PREDICTED: uncharacterized protein LOC105641613 [Jatropha curcas]
9 Hb_005291_050 0.0789012635 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6-like isoform X1 [Jatropha curcas]
10 Hb_006455_120 0.0810838 - - n6-DNA-methyltransferase, putative [Ricinus communis]
11 Hb_006634_070 0.0817191941 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
12 Hb_001902_030 0.0833023204 - - PREDICTED: SKP1-like protein 21 isoform X1 [Jatropha curcas]
13 Hb_032202_140 0.0843872003 - - PREDICTED: flap endonuclease GEN-like 1 [Jatropha curcas]
14 Hb_005269_070 0.0855550998 - - PREDICTED: translation factor GUF1 homolog, organellar chromatophore [Jatropha curcas]
15 Hb_002263_020 0.0870675163 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
16 Hb_000029_300 0.0875388054 - - hypothetical protein JCGZ_10048 [Jatropha curcas]
17 Hb_008959_010 0.0878777441 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000207_050 0.0882823902 - - PREDICTED: uncharacterized protein LOC105634369 isoform X1 [Jatropha curcas]
19 Hb_002809_050 0.0889553741 - - PREDICTED: protein FIZZY-RELATED 2 [Jatropha curcas]
20 Hb_002909_140 0.0889766044 - - PREDICTED: D-xylose-proton symporter-like 2 [Jatropha curcas]

Gene co-expression network

sample Hb_007416_330 Hb_007416_330 Hb_007894_110 Hb_007894_110 Hb_007416_330--Hb_007894_110 Hb_006017_010 Hb_006017_010 Hb_007416_330--Hb_006017_010 Hb_001221_080 Hb_001221_080 Hb_007416_330--Hb_001221_080 Hb_109980_010 Hb_109980_010 Hb_007416_330--Hb_109980_010 Hb_001408_140 Hb_001408_140 Hb_007416_330--Hb_001408_140 Hb_114310_090 Hb_114310_090 Hb_007416_330--Hb_114310_090 Hb_007894_110--Hb_001408_140 Hb_024621_040 Hb_024621_040 Hb_007894_110--Hb_024621_040 Hb_000025_730 Hb_000025_730 Hb_007894_110--Hb_000025_730 Hb_003428_010 Hb_003428_010 Hb_007894_110--Hb_003428_010 Hb_003058_260 Hb_003058_260 Hb_007894_110--Hb_003058_260 Hb_004117_260 Hb_004117_260 Hb_006017_010--Hb_004117_260 Hb_050622_050 Hb_050622_050 Hb_006017_010--Hb_050622_050 Hb_105105_020 Hb_105105_020 Hb_006017_010--Hb_105105_020 Hb_006915_030 Hb_006915_030 Hb_006017_010--Hb_006915_030 Hb_015934_040 Hb_015934_040 Hb_006017_010--Hb_015934_040 Hb_000441_220 Hb_000441_220 Hb_001221_080--Hb_000441_220 Hb_001221_080--Hb_001408_140 Hb_000029_300 Hb_000029_300 Hb_001221_080--Hb_000029_300 Hb_002909_140 Hb_002909_140 Hb_001221_080--Hb_002909_140 Hb_013399_020 Hb_013399_020 Hb_001221_080--Hb_013399_020 Hb_000213_010 Hb_000213_010 Hb_001221_080--Hb_000213_010 Hb_015807_050 Hb_015807_050 Hb_109980_010--Hb_015807_050 Hb_006483_110 Hb_006483_110 Hb_109980_010--Hb_006483_110 Hb_006501_090 Hb_006501_090 Hb_109980_010--Hb_006501_090 Hb_001655_030 Hb_001655_030 Hb_109980_010--Hb_001655_030 Hb_007657_010 Hb_007657_010 Hb_109980_010--Hb_007657_010 Hb_000935_010 Hb_000935_010 Hb_109980_010--Hb_000935_010 Hb_105105_010 Hb_105105_010 Hb_001408_140--Hb_105105_010 Hb_001195_530 Hb_001195_530 Hb_001408_140--Hb_001195_530 Hb_003464_090 Hb_003464_090 Hb_001408_140--Hb_003464_090 Hb_021419_030 Hb_021419_030 Hb_001408_140--Hb_021419_030 Hb_093458_040 Hb_093458_040 Hb_001408_140--Hb_093458_040 Hb_000340_530 Hb_000340_530 Hb_001408_140--Hb_000340_530 Hb_001243_040 Hb_001243_040 Hb_114310_090--Hb_001243_040 Hb_032202_140 Hb_032202_140 Hb_114310_090--Hb_032202_140 Hb_002013_020 Hb_002013_020 Hb_114310_090--Hb_002013_020 Hb_001632_040 Hb_001632_040 Hb_114310_090--Hb_001632_040 Hb_123915_040 Hb_123915_040 Hb_114310_090--Hb_123915_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.8574 9.7098 13.5171 12.592 15.198 12.6665
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.75388 12.9088 18.8525 12.8896 12.7362

CAGE analysis