Hb_007416_340

Information

Type -
Description -
Location Contig7416: 215214-220478
Sequence    

Annotation

kegg
ID rcu:RCOM_0204870
description Protein ABC1, mitochondrial precursor, putative
nr
ID XP_012076326.1
description PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q8RWG1
description Uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic OS=Arabidopsis thaliana GN=At4g31390 PE=2 SV=1
trembl
ID A0A067KNP6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07010 PE=4 SV=1
Gene Ontology
ID GO:0004672
description uncharacterized aarf domain-containing protein kinase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56458: 219106-219651
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007416_340 0.0 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_003125_120 0.0428949752 - - PREDICTED: TITAN-like protein [Jatropha curcas]
3 Hb_003938_090 0.0568126294 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000484_030 0.0601854568 - - PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 3 [Jatropha curcas]
5 Hb_008453_140 0.0615255422 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
6 Hb_001946_400 0.0618927926 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
7 Hb_001922_150 0.0632696621 - - PREDICTED: WD repeat-containing protein 91 homolog isoform X1 [Jatropha curcas]
8 Hb_019280_030 0.0632981276 - - -
9 Hb_000220_010 0.0636376033 - - PREDICTED: uncharacterized protein LOC105630083 [Jatropha curcas]
10 Hb_008847_030 0.0647006807 - - PREDICTED: TLD domain-containing protein 1 [Jatropha curcas]
11 Hb_001142_030 0.0670750083 - - PREDICTED: uncharacterized protein LOC105640023 [Jatropha curcas]
12 Hb_000116_450 0.0685519713 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 1 [Jatropha curcas]
13 Hb_007390_010 0.0687373065 - - catalytic, putative [Ricinus communis]
14 Hb_000334_280 0.0696851961 - - PREDICTED: protein FRA10AC1 [Jatropha curcas]
15 Hb_000696_230 0.0700548444 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
16 Hb_001902_030 0.0706397935 - - PREDICTED: SKP1-like protein 21 isoform X1 [Jatropha curcas]
17 Hb_001021_150 0.0706608979 - - PREDICTED: metal tolerance protein C1 [Jatropha curcas]
18 Hb_006831_140 0.0716343889 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
19 Hb_002518_280 0.0720266325 - - phosphate transporter [Manihot esculenta]
20 Hb_001163_050 0.0720604878 - - PREDICTED: histone deacetylase 9 [Jatropha curcas]

Gene co-expression network

sample Hb_007416_340 Hb_007416_340 Hb_003125_120 Hb_003125_120 Hb_007416_340--Hb_003125_120 Hb_003938_090 Hb_003938_090 Hb_007416_340--Hb_003938_090 Hb_000484_030 Hb_000484_030 Hb_007416_340--Hb_000484_030 Hb_008453_140 Hb_008453_140 Hb_007416_340--Hb_008453_140 Hb_001946_400 Hb_001946_400 Hb_007416_340--Hb_001946_400 Hb_001922_150 Hb_001922_150 Hb_007416_340--Hb_001922_150 Hb_000334_280 Hb_000334_280 Hb_003125_120--Hb_000334_280 Hb_000403_050 Hb_000403_050 Hb_003125_120--Hb_000403_050 Hb_001163_050 Hb_001163_050 Hb_003125_120--Hb_001163_050 Hb_003125_120--Hb_008453_140 Hb_001142_030 Hb_001142_030 Hb_003125_120--Hb_001142_030 Hb_008847_030 Hb_008847_030 Hb_003938_090--Hb_008847_030 Hb_003647_140 Hb_003647_140 Hb_003938_090--Hb_003647_140 Hb_001470_030 Hb_001470_030 Hb_003938_090--Hb_001470_030 Hb_000340_180 Hb_000340_180 Hb_003938_090--Hb_000340_180 Hb_002641_060 Hb_002641_060 Hb_003938_090--Hb_002641_060 Hb_000484_030--Hb_008453_140 Hb_001409_020 Hb_001409_020 Hb_000484_030--Hb_001409_020 Hb_001408_040 Hb_001408_040 Hb_000484_030--Hb_001408_040 Hb_000484_030--Hb_003125_120 Hb_000696_230 Hb_000696_230 Hb_000484_030--Hb_000696_230 Hb_120410_010 Hb_120410_010 Hb_008453_140--Hb_120410_010 Hb_010381_090 Hb_010381_090 Hb_008453_140--Hb_010381_090 Hb_008453_140--Hb_001142_030 Hb_002872_030 Hb_002872_030 Hb_008453_140--Hb_002872_030 Hb_000220_010 Hb_000220_010 Hb_008453_140--Hb_000220_010 Hb_001021_150 Hb_001021_150 Hb_001946_400--Hb_001021_150 Hb_014834_150 Hb_014834_150 Hb_001946_400--Hb_014834_150 Hb_001599_040 Hb_001599_040 Hb_001946_400--Hb_001599_040 Hb_002553_060 Hb_002553_060 Hb_001946_400--Hb_002553_060 Hb_001946_400--Hb_008847_030 Hb_000976_140 Hb_000976_140 Hb_001922_150--Hb_000976_140 Hb_019280_030 Hb_019280_030 Hb_001922_150--Hb_019280_030 Hb_000313_220 Hb_000313_220 Hb_001922_150--Hb_000313_220 Hb_005730_040 Hb_005730_040 Hb_001922_150--Hb_005730_040 Hb_004020_040 Hb_004020_040 Hb_001922_150--Hb_004020_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.01473 1.03809 0.976665 1.0079 1.11795 1.36669
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.05341 1.44563 0.802468 0.890196 1.09736

CAGE analysis