Hb_007416_380

Information

Type -
Description -
Location Contig7416: 250410-251249
Sequence    

Annotation

kegg
ID rcu:RCOM_0204910
description hypothetical protein
nr
ID XP_012076319.1
description PREDICTED: fasciclin-like arabinogalactan protein 3 [Jatropha curcas]
swissprot
ID Q9ZQ23
description Fasciclin-like arabinogalactan protein 3 OS=Arabidopsis thaliana GN=FLA3 PE=2 SV=1
trembl
ID A0A067KMB6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07006 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007416_380 0.0 - - PREDICTED: fasciclin-like arabinogalactan protein 3 [Jatropha curcas]
2 Hb_000069_390 0.0295003856 - - PREDICTED: probable F-box protein At3g61730 [Jatropha curcas]
3 Hb_000574_520 0.1089357732 - - PREDICTED: uncharacterized protein LOC105634842 isoform X1 [Jatropha curcas]
4 Hb_141199_010 0.1136368976 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_005181_020 0.1518307572 - - Pectinesterase-2 precursor, putative [Ricinus communis]
6 Hb_183612_020 0.1842598181 - - PREDICTED: small heat shock protein, chloroplastic-like [Nelumbo nucifera]
7 Hb_002450_150 0.1851248101 - - ATP binding protein, putative [Ricinus communis]
8 Hb_004449_160 0.1955556663 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_171646_010 0.2035429396 - - hypothetical protein B456_012G144300, partial [Gossypium raimondii]
10 Hb_000429_210 0.2084553994 transcription factor TF Family: ERF hypothetical protein RCOM_0089590 [Ricinus communis]
11 Hb_000107_670 0.2092779036 transcription factor TF Family: MIKC floral homeotic protein AGAMOUS [Jatropha curcas]
12 Hb_001926_050 0.2238916808 - - PREDICTED: peroxidase 19 [Jatropha curcas]
13 Hb_004722_050 0.224010656 - - hypothetical protein POPTR_0011s02010g [Populus trichocarpa]
14 Hb_004117_070 0.2241011542 - - PREDICTED: GDSL esterase/lipase At1g71691 [Jatropha curcas]
15 Hb_000514_010 0.2246137021 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA4 [Jatropha curcas]
16 Hb_030385_030 0.2249457922 - - PREDICTED: B3 domain-containing protein At3g19184 isoform X1 [Jatropha curcas]
17 Hb_001171_020 0.2251004449 - - PREDICTED: gibberellin 3-beta-dioxygenase 3-like [Citrus sinensis]
18 Hb_011179_010 0.2252936537 transcription factor TF Family: ERF hypothetical protein JCGZ_14625 [Jatropha curcas]
19 Hb_001372_010 0.2254268131 - - ankyrin repeat-containing protein, putative [Ricinus communis]
20 Hb_004598_010 0.2254643774 - - PREDICTED: 11-beta-hydroxysteroid dehydrogenase-like 5 [Jatropha curcas]

Gene co-expression network

sample Hb_007416_380 Hb_007416_380 Hb_000069_390 Hb_000069_390 Hb_007416_380--Hb_000069_390 Hb_000574_520 Hb_000574_520 Hb_007416_380--Hb_000574_520 Hb_141199_010 Hb_141199_010 Hb_007416_380--Hb_141199_010 Hb_005181_020 Hb_005181_020 Hb_007416_380--Hb_005181_020 Hb_183612_020 Hb_183612_020 Hb_007416_380--Hb_183612_020 Hb_002450_150 Hb_002450_150 Hb_007416_380--Hb_002450_150 Hb_000069_390--Hb_000574_520 Hb_000069_390--Hb_141199_010 Hb_000069_390--Hb_005181_020 Hb_004449_160 Hb_004449_160 Hb_000069_390--Hb_004449_160 Hb_000069_390--Hb_002450_150 Hb_000574_520--Hb_183612_020 Hb_000574_520--Hb_002450_150 Hb_000574_520--Hb_141199_010 Hb_000574_520--Hb_005181_020 Hb_141199_010--Hb_005181_020 Hb_007904_050 Hb_007904_050 Hb_141199_010--Hb_007904_050 Hb_141199_010--Hb_183612_020 Hb_005181_020--Hb_007904_050 Hb_115823_010 Hb_115823_010 Hb_005181_020--Hb_115823_010 Hb_183612_020--Hb_002450_150 Hb_059295_010 Hb_059295_010 Hb_183612_020--Hb_059295_010 Hb_001829_030 Hb_001829_030 Hb_183612_020--Hb_001829_030 Hb_002450_150--Hb_141199_010 Hb_000000_040 Hb_000000_040 Hb_002450_150--Hb_000000_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.383748 0.070742 0 0.0486544
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis