Hb_007423_040

Information

Type -
Description -
Location Contig7423: 36508-42094
Sequence    

Annotation

kegg
ID rcu:RCOM_0823750
description poly-A binding protein, putative
nr
ID XP_012069150.1
description PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Jatropha curcas]
swissprot
ID Q9FJN9
description Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PABN2 PE=1 SV=1
trembl
ID A0A067KXI2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24915 PE=4 SV=1
Gene Ontology
ID GO:0000166
description polyadenylate-binding protein 2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56523: 34707-41998 , PASA_asmbl_56524: 39736-39850
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007423_040 0.0 - - PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Jatropha curcas]
2 Hb_005730_120 0.0690204055 - - PREDICTED: protein WHI4 [Jatropha curcas]
3 Hb_007576_080 0.0696748558 - - PREDICTED: uncharacterized protein LOC105643972 [Jatropha curcas]
4 Hb_002192_010 0.0759639291 - - -
5 Hb_000152_500 0.0760336894 - - PREDICTED: probable mitochondrial intermediate peptidase, mitochondrial [Jatropha curcas]
6 Hb_027472_040 0.0765435261 - - SKP1 [Hevea brasiliensis]
7 Hb_001534_120 0.0774022719 - - PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 1 [Gossypium raimondii]
8 Hb_002320_040 0.0776111443 - - PREDICTED: oligosaccharyltransferase complex subunit ostc [Jatropha curcas]
9 Hb_005271_220 0.0784717607 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
10 Hb_014109_040 0.0788701264 - - PREDICTED: probable folylpolyglutamate synthase [Jatropha curcas]
11 Hb_004453_130 0.0798014952 - - PREDICTED: tRNA (cytosine-5-)-methyltransferase isoform X1 [Jatropha curcas]
12 Hb_024958_010 0.0837431994 - - PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105 [Jatropha curcas]
13 Hb_008511_120 0.0839133858 - - NADH-ubiquinone oxidoreductase 1, chain, putative [Ricinus communis]
14 Hb_002245_030 0.0847132591 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
15 Hb_032808_010 0.0851428105 - - PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]
16 Hb_011909_120 0.0855742071 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
17 Hb_002534_150 0.0862965573 - - catalytic, putative [Ricinus communis]
18 Hb_000010_110 0.0863159651 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]
19 Hb_002217_510 0.0865474145 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002585_040 0.086571773 - - PREDICTED: cell division control protein 48 homolog B [Jatropha curcas]

Gene co-expression network

sample Hb_007423_040 Hb_007423_040 Hb_005730_120 Hb_005730_120 Hb_007423_040--Hb_005730_120 Hb_007576_080 Hb_007576_080 Hb_007423_040--Hb_007576_080 Hb_002192_010 Hb_002192_010 Hb_007423_040--Hb_002192_010 Hb_000152_500 Hb_000152_500 Hb_007423_040--Hb_000152_500 Hb_027472_040 Hb_027472_040 Hb_007423_040--Hb_027472_040 Hb_001534_120 Hb_001534_120 Hb_007423_040--Hb_001534_120 Hb_005271_220 Hb_005271_220 Hb_005730_120--Hb_005271_220 Hb_032808_010 Hb_032808_010 Hb_005730_120--Hb_032808_010 Hb_002303_070 Hb_002303_070 Hb_005730_120--Hb_002303_070 Hb_001599_040 Hb_001599_040 Hb_005730_120--Hb_001599_040 Hb_004453_130 Hb_004453_130 Hb_005730_120--Hb_004453_130 Hb_002311_180 Hb_002311_180 Hb_005730_120--Hb_002311_180 Hb_014109_040 Hb_014109_040 Hb_007576_080--Hb_014109_040 Hb_003780_030 Hb_003780_030 Hb_007576_080--Hb_003780_030 Hb_000589_120 Hb_000589_120 Hb_007576_080--Hb_000589_120 Hb_002652_030 Hb_002652_030 Hb_007576_080--Hb_002652_030 Hb_002585_040 Hb_002585_040 Hb_007576_080--Hb_002585_040 Hb_124953_020 Hb_124953_020 Hb_002192_010--Hb_124953_020 Hb_002078_140 Hb_002078_140 Hb_002192_010--Hb_002078_140 Hb_005773_060 Hb_005773_060 Hb_002192_010--Hb_005773_060 Hb_000610_050 Hb_000610_050 Hb_002192_010--Hb_000610_050 Hb_000172_640 Hb_000172_640 Hb_002192_010--Hb_000172_640 Hb_003151_040 Hb_003151_040 Hb_000152_500--Hb_003151_040 Hb_000373_070 Hb_000373_070 Hb_000152_500--Hb_000373_070 Hb_001470_030 Hb_001470_030 Hb_000152_500--Hb_001470_030 Hb_001133_120 Hb_001133_120 Hb_000152_500--Hb_001133_120 Hb_006059_050 Hb_006059_050 Hb_000152_500--Hb_006059_050 Hb_027380_050 Hb_027380_050 Hb_000152_500--Hb_027380_050 Hb_027472_040--Hb_000610_050 Hb_003125_200 Hb_003125_200 Hb_027472_040--Hb_003125_200 Hb_001504_020 Hb_001504_020 Hb_027472_040--Hb_001504_020 Hb_029388_020 Hb_029388_020 Hb_027472_040--Hb_029388_020 Hb_000457_100 Hb_000457_100 Hb_027472_040--Hb_000457_100 Hb_027472_040--Hb_007576_080 Hb_001195_480 Hb_001195_480 Hb_001534_120--Hb_001195_480 Hb_007477_070 Hb_007477_070 Hb_001534_120--Hb_007477_070 Hb_010921_010 Hb_010921_010 Hb_001534_120--Hb_010921_010 Hb_002534_150 Hb_002534_150 Hb_001534_120--Hb_002534_150 Hb_001512_060 Hb_001512_060 Hb_001534_120--Hb_001512_060 Hb_000362_200 Hb_000362_200 Hb_001534_120--Hb_000362_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.6334 22.755 28.0709 23.2039 26.1541 22.341
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.4483 43.1319 15.6675 26.4895 13.4837

CAGE analysis