Hb_007426_030

Information

Type -
Description -
Location Contig7426: 33118-35335
Sequence    

Annotation

kegg
ID pop:POPTR_0012s10980g
description POPTRDRAFT_891388; pentatricopeptide repeat-containing family protein
nr
ID XP_012066813.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g34400 [Jatropha curcas]
swissprot
ID O64705
description Pentatricopeptide repeat-containing protein At2g34400 OS=Arabidopsis thaliana GN=PCMP-E23 PE=3 SV=2
trembl
ID A0A067LP25
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04569 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at2g34400

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007426_030 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g34400 [Jatropha curcas]
2 Hb_000103_180 0.0522939338 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
3 Hb_001019_060 0.0535404086 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Jatropha curcas]
4 Hb_000808_230 0.0607244254 - - PREDICTED: peptide chain release factor PrfB2, chloroplastic [Jatropha curcas]
5 Hb_000483_200 0.0609347118 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
6 Hb_002079_010 0.0648097873 - - hypothetical protein POPTR_0001s01970g [Populus trichocarpa]
7 Hb_006400_060 0.0722002208 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 31 isoform X1 [Jatropha curcas]
8 Hb_004109_090 0.0739262477 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_004724_200 0.0761977538 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
10 Hb_011673_030 0.0766701403 - - hypothetical protein JCGZ_22219 [Jatropha curcas]
11 Hb_033642_010 0.0813051132 - - PREDICTED: protection of telomeres protein 1a-like isoform X2 [Jatropha curcas]
12 Hb_007044_140 0.0818839027 - - PREDICTED: translation initiation factor eIF-2B subunit delta [Jatropha curcas]
13 Hb_001266_080 0.0846251563 - - PREDICTED: eukaryotic translation initiation factor 2 subunit gamma-like [Jatropha curcas]
14 Hb_005489_110 0.0846989746 - - PREDICTED: putative transferase CAF17 homolog, mitochondrial [Jatropha curcas]
15 Hb_001258_040 0.0853197764 - - hypothetical protein JCGZ_12578 [Jatropha curcas]
16 Hb_004055_140 0.0857246596 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
17 Hb_000796_220 0.0863275865 - - PREDICTED: uncharacterized protein LOC105642644 isoform X3 [Jatropha curcas]
18 Hb_028872_140 0.087011715 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
19 Hb_015306_020 0.0870331361 transcription factor TF Family: MYB-related PREDICTED: dnaJ homolog subfamily C member 2 [Jatropha curcas]
20 Hb_002016_110 0.0875109287 - - transducin family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_007426_030 Hb_007426_030 Hb_000103_180 Hb_000103_180 Hb_007426_030--Hb_000103_180 Hb_001019_060 Hb_001019_060 Hb_007426_030--Hb_001019_060 Hb_000808_230 Hb_000808_230 Hb_007426_030--Hb_000808_230 Hb_000483_200 Hb_000483_200 Hb_007426_030--Hb_000483_200 Hb_002079_010 Hb_002079_010 Hb_007426_030--Hb_002079_010 Hb_006400_060 Hb_006400_060 Hb_007426_030--Hb_006400_060 Hb_000103_180--Hb_002079_010 Hb_004724_200 Hb_004724_200 Hb_000103_180--Hb_004724_200 Hb_004109_090 Hb_004109_090 Hb_000103_180--Hb_004109_090 Hb_002811_360 Hb_002811_360 Hb_000103_180--Hb_002811_360 Hb_000103_180--Hb_000483_200 Hb_001019_060--Hb_000103_180 Hb_000538_200 Hb_000538_200 Hb_001019_060--Hb_000538_200 Hb_001019_060--Hb_002079_010 Hb_005489_110 Hb_005489_110 Hb_001019_060--Hb_005489_110 Hb_001019_060--Hb_000808_230 Hb_000808_230--Hb_006400_060 Hb_000796_220 Hb_000796_220 Hb_000808_230--Hb_000796_220 Hb_044728_010 Hb_044728_010 Hb_000808_230--Hb_044728_010 Hb_001545_120 Hb_001545_120 Hb_000808_230--Hb_001545_120 Hb_000170_210 Hb_000170_210 Hb_000808_230--Hb_000170_210 Hb_000483_200--Hb_006400_060 Hb_006400_030 Hb_006400_030 Hb_000483_200--Hb_006400_030 Hb_003032_040 Hb_003032_040 Hb_000483_200--Hb_003032_040 Hb_002016_110 Hb_002016_110 Hb_000483_200--Hb_002016_110 Hb_001959_210 Hb_001959_210 Hb_000483_200--Hb_001959_210 Hb_002030_030 Hb_002030_030 Hb_002079_010--Hb_002030_030 Hb_002079_010--Hb_006400_060 Hb_063090_010 Hb_063090_010 Hb_002079_010--Hb_063090_010 Hb_000179_020 Hb_000179_020 Hb_002079_010--Hb_000179_020 Hb_006400_060--Hb_003032_040 Hb_006400_060--Hb_002016_110 Hb_006400_060--Hb_006400_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.705841 0.353819 0.265729 0.358993 0.921839 1.4105
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.848768 0.864226 1.04022 0.67264 0.538109

CAGE analysis