Hb_007426_130

Information

Type -
Description -
Location Contig7426: 136003-144254
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa002887mg
description hypothetical protein
nr
ID XP_012072134.1
description PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
swissprot
ID P58223
description KH domain-containing protein At4g18375 OS=Arabidopsis thaliana GN=At4g18375 PE=2 SV=1
trembl
ID A0A067KP38
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04639 PE=4 SV=1
Gene Ontology
ID GO:0003723
description kh domain-containing protein at4g18375-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56545: 136084-142054 , PASA_asmbl_56549: 143970-144254
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007426_130 0.0 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
2 Hb_000922_370 0.0534467775 - - PREDICTED: uncharacterized protein LOC105640366 [Jatropha curcas]
3 Hb_002329_040 0.0609650233 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
4 Hb_009615_170 0.0639379458 - - PREDICTED: sphingoid long-chain bases kinase 1 isoform X1 [Jatropha curcas]
5 Hb_000183_020 0.063939878 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
6 Hb_001821_090 0.0644698801 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
7 Hb_000261_030 0.0675676869 - - PREDICTED: uncharacterized protein LOC105633147 [Jatropha curcas]
8 Hb_003177_060 0.0679042959 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X1 [Jatropha curcas]
9 Hb_001860_040 0.0743161906 - - PREDICTED: cleavage stimulation factor subunit 77 isoform X4 [Jatropha curcas]
10 Hb_000740_100 0.0745362274 - - calpain, putative [Ricinus communis]
11 Hb_002174_020 0.0746440134 - - ring finger protein, putative [Ricinus communis]
12 Hb_061878_010 0.0750349588 - - hypothetical protein CISIN_1g0094072mg, partial [Citrus sinensis]
13 Hb_157966_010 0.0756452613 - - hypothetical protein JCGZ_13877 [Jatropha curcas]
14 Hb_000160_290 0.0763290525 - - unnamed protein product [Vitis vinifera]
15 Hb_012395_140 0.077520288 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
16 Hb_001195_320 0.0776630047 - - PREDICTED: S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Jatropha curcas]
17 Hb_008103_020 0.0783081127 - - hypothetical protein POPTR_0003s20310g [Populus trichocarpa]
18 Hb_007508_080 0.0783342482 - - PREDICTED: presenilin-like protein At2g29900 [Jatropha curcas]
19 Hb_002107_070 0.0783980777 - - hypothetical protein RCOM_1598630 [Ricinus communis]
20 Hb_001493_040 0.0787256537 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]

Gene co-expression network

sample Hb_007426_130 Hb_007426_130 Hb_000922_370 Hb_000922_370 Hb_007426_130--Hb_000922_370 Hb_002329_040 Hb_002329_040 Hb_007426_130--Hb_002329_040 Hb_009615_170 Hb_009615_170 Hb_007426_130--Hb_009615_170 Hb_000183_020 Hb_000183_020 Hb_007426_130--Hb_000183_020 Hb_001821_090 Hb_001821_090 Hb_007426_130--Hb_001821_090 Hb_000261_030 Hb_000261_030 Hb_007426_130--Hb_000261_030 Hb_003044_020 Hb_003044_020 Hb_000922_370--Hb_003044_020 Hb_000922_370--Hb_002329_040 Hb_003362_070 Hb_003362_070 Hb_000922_370--Hb_003362_070 Hb_002174_020 Hb_002174_020 Hb_000922_370--Hb_002174_020 Hb_000160_290 Hb_000160_290 Hb_000922_370--Hb_000160_290 Hb_002107_070 Hb_002107_070 Hb_002329_040--Hb_002107_070 Hb_027380_140 Hb_027380_140 Hb_002329_040--Hb_027380_140 Hb_000740_100 Hb_000740_100 Hb_002329_040--Hb_000740_100 Hb_012395_140 Hb_012395_140 Hb_002329_040--Hb_012395_140 Hb_001195_320 Hb_001195_320 Hb_002329_040--Hb_001195_320 Hb_002329_040--Hb_000183_020 Hb_009615_170--Hb_001821_090 Hb_009615_170--Hb_012395_140 Hb_004884_150 Hb_004884_150 Hb_009615_170--Hb_004884_150 Hb_159558_010 Hb_159558_010 Hb_009615_170--Hb_159558_010 Hb_000579_230 Hb_000579_230 Hb_009615_170--Hb_000579_230 Hb_000174_060 Hb_000174_060 Hb_009615_170--Hb_000174_060 Hb_000183_020--Hb_003044_020 Hb_000183_020--Hb_001195_320 Hb_000183_020--Hb_003362_070 Hb_000166_130 Hb_000166_130 Hb_000183_020--Hb_000166_130 Hb_000183_020--Hb_000922_370 Hb_000069_410 Hb_000069_410 Hb_001821_090--Hb_000069_410 Hb_001821_090--Hb_002107_070 Hb_028487_010 Hb_028487_010 Hb_001821_090--Hb_028487_010 Hb_003058_060 Hb_003058_060 Hb_001821_090--Hb_003058_060 Hb_001821_090--Hb_000579_230 Hb_000261_030--Hb_000740_100 Hb_000035_410 Hb_000035_410 Hb_000261_030--Hb_000035_410 Hb_001235_230 Hb_001235_230 Hb_000261_030--Hb_001235_230 Hb_003124_160 Hb_003124_160 Hb_000261_030--Hb_003124_160 Hb_004453_110 Hb_004453_110 Hb_000261_030--Hb_004453_110 Hb_000261_030--Hb_002329_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.7192 30.1946 12.5004 18.3526 22.2539 32.6885
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.6723 7.93598 13.9146 22.4868 17.7968

CAGE analysis