Hb_007426_170

Information

Type transcription factor
Description TF Family: TCP
Location Contig7426: 176076-179903
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56554: 164261-179903 , PASA_asmbl_56555: 164271-179903 , PASA_asmbl_56556: 179721-179877
cDNA
(Sanger)
(ID:Location)		 022_P14.ab1: 177874-179903 , 038_P20.ab1: 177693-179912 , 039_O13.ab1: 177671-179903

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007426_170 0.0 transcription factor TF Family: TCP -
2 Hb_000005_130 0.0924401687 - - hypothetical protein POPTR_0004s22660g [Populus trichocarpa]
3 Hb_001959_060 0.0975445679 - - PREDICTED: carboxyl-terminal-processing peptidase 2, chloroplastic [Jatropha curcas]
4 Hb_006829_080 0.1007657333 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
5 Hb_000548_060 0.1038943626 - - PREDICTED: fruit protein pKIWI502 [Jatropha curcas]
6 Hb_000112_060 0.1041843564 - - PREDICTED: thioredoxin-like protein CITRX, chloroplastic [Jatropha curcas]
7 Hb_000976_190 0.1083158592 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
8 Hb_010128_020 0.1083464555 - - hypothetical protein POPTR_0001s24210g [Populus trichocarpa]
9 Hb_189003_060 0.1090680564 - - PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_000152_480 0.1105389829 - - PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Jatropha curcas]
11 Hb_036790_120 0.1145555682 - - PREDICTED: uncharacterized protein LOC105645122 isoform X1 [Jatropha curcas]
12 Hb_007694_060 0.1175139758 - - PREDICTED: 50S ribosomal protein L35, chloroplastic [Jatropha curcas]
13 Hb_003029_020 0.1219865606 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
14 Hb_000059_270 0.1244357492 - - superoxide dismutase [Fe], chloroplastic [Jatropha curcas]
15 Hb_000110_230 0.1246646818 - - Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative [Ricinus communis]
16 Hb_003171_030 0.1264377142 - - PREDICTED: grpE protein homolog, mitochondrial [Jatropha curcas]
17 Hb_004117_040 0.1264429258 - - PREDICTED: uncharacterized protein LOC105638287 [Jatropha curcas]
18 Hb_000473_050 0.127190851 - - chromatin regulatory protein sir2, putative [Ricinus communis]
19 Hb_005147_080 0.1301092727 - - PREDICTED: prolycopene isomerase, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_001124_190 0.1309601682 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007426_170 Hb_007426_170 Hb_000005_130 Hb_000005_130 Hb_007426_170--Hb_000005_130 Hb_001959_060 Hb_001959_060 Hb_007426_170--Hb_001959_060 Hb_006829_080 Hb_006829_080 Hb_007426_170--Hb_006829_080 Hb_000548_060 Hb_000548_060 Hb_007426_170--Hb_000548_060 Hb_000112_060 Hb_000112_060 Hb_007426_170--Hb_000112_060 Hb_000976_190 Hb_000976_190 Hb_007426_170--Hb_000976_190 Hb_000005_130--Hb_006829_080 Hb_007694_060 Hb_007694_060 Hb_000005_130--Hb_007694_060 Hb_000802_050 Hb_000802_050 Hb_000005_130--Hb_000802_050 Hb_006620_070 Hb_006620_070 Hb_000005_130--Hb_006620_070 Hb_000005_130--Hb_001959_060 Hb_001959_060--Hb_006829_080 Hb_005618_080 Hb_005618_080 Hb_001959_060--Hb_005618_080 Hb_000684_430 Hb_000684_430 Hb_001959_060--Hb_000684_430 Hb_148146_010 Hb_148146_010 Hb_001959_060--Hb_148146_010 Hb_189003_060 Hb_189003_060 Hb_001959_060--Hb_189003_060 Hb_000402_020 Hb_000402_020 Hb_001959_060--Hb_000402_020 Hb_000473_050 Hb_000473_050 Hb_006829_080--Hb_000473_050 Hb_006829_080--Hb_000684_430 Hb_002232_380 Hb_002232_380 Hb_006829_080--Hb_002232_380 Hb_004055_160 Hb_004055_160 Hb_006829_080--Hb_004055_160 Hb_014361_110 Hb_014361_110 Hb_000548_060--Hb_014361_110 Hb_036790_120 Hb_036790_120 Hb_000548_060--Hb_036790_120 Hb_010128_020 Hb_010128_020 Hb_000548_060--Hb_010128_020 Hb_000548_060--Hb_001959_060 Hb_003029_020 Hb_003029_020 Hb_000548_060--Hb_003029_020 Hb_000112_060--Hb_010128_020 Hb_000112_060--Hb_036790_120 Hb_005276_010 Hb_005276_010 Hb_000112_060--Hb_005276_010 Hb_000152_480 Hb_000152_480 Hb_000112_060--Hb_000152_480 Hb_000112_060--Hb_003029_020 Hb_011310_140 Hb_011310_140 Hb_000976_190--Hb_011310_140 Hb_004871_010 Hb_004871_010 Hb_000976_190--Hb_004871_010 Hb_006787_090 Hb_006787_090 Hb_000976_190--Hb_006787_090 Hb_000194_010 Hb_000194_010 Hb_000976_190--Hb_000194_010 Hb_011861_050 Hb_011861_050 Hb_000976_190--Hb_011861_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.13919 4.0274 35.3353 8.82459 4.75295 5.75348
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.58887 14.7138 6.54889 5.88957 50.329

CAGE analysis