Hb_007426_190

Information

Type -
Description -
Location Contig7426: 221911-222312
Sequence    

Annotation

kegg
ID pmum:103325200
description uncharacterized LOC103325200
nr
ID XP_008225567.1
description PREDICTED: uncharacterized protein LOC103325200 [Prunus mume]
swissprot
ID -
description -
trembl
ID A0A0D2UFR3
description Gossypium raimondii chromosome 10, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_010G167500 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56560: 221541-221737
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007426_190 0.0 - - PREDICTED: uncharacterized protein LOC103325200 [Prunus mume]
2 Hb_000227_300 0.065862847 - - conserved hypothetical protein [Ricinus communis]
3 Hb_007846_030 0.0685023 - - Uncharacterized protein TCM_021839 [Theobroma cacao]
4 Hb_000861_060 0.0744745424 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Jatropha curcas]
5 Hb_097292_010 0.0776891234 - - PREDICTED: uncharacterized protein LOC105643999 [Jatropha curcas]
6 Hb_005731_040 0.1043019165 - - PREDICTED: glutaredoxin-C1-like [Jatropha curcas]
7 Hb_051408_010 0.107826356 - - calcineurin-like phosphoesterase [Manihot esculenta]
8 Hb_000586_110 0.1100589757 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
9 Hb_009070_010 0.1164386581 - - Spermidine synthase, putative [Ricinus communis]
10 Hb_005694_170 0.1192914683 - - PREDICTED: uncharacterized protein At3g49140 isoform X2 [Jatropha curcas]
11 Hb_084812_010 0.1200608741 - - PREDICTED: putative RING-H2 finger protein ATL21B [Vitis vinifera]
12 Hb_001715_060 0.122385477 - - PREDICTED: gibberellin 3-beta-dioxygenase 1 [Jatropha curcas]
13 Hb_001032_080 0.1234229708 - - Ankyrin repeat protein [Medicago truncatula]
14 Hb_059275_010 0.1236895227 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
15 Hb_004531_130 0.1306130846 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X2 [Jatropha curcas]
16 Hb_003248_030 0.13392247 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
17 Hb_026218_010 0.1365661576 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003598_020 0.1380541783 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 12 [Jatropha curcas]
19 Hb_000878_080 0.1400328262 - - PREDICTED: uncharacterized protein LOC105635777 [Jatropha curcas]
20 Hb_002626_060 0.1448075612 - - hypothetical protein JCGZ_27059 [Jatropha curcas]

Gene co-expression network

sample Hb_007426_190 Hb_007426_190 Hb_000227_300 Hb_000227_300 Hb_007426_190--Hb_000227_300 Hb_007846_030 Hb_007846_030 Hb_007426_190--Hb_007846_030 Hb_000861_060 Hb_000861_060 Hb_007426_190--Hb_000861_060 Hb_097292_010 Hb_097292_010 Hb_007426_190--Hb_097292_010 Hb_005731_040 Hb_005731_040 Hb_007426_190--Hb_005731_040 Hb_051408_010 Hb_051408_010 Hb_007426_190--Hb_051408_010 Hb_000227_300--Hb_000861_060 Hb_000227_300--Hb_051408_010 Hb_009070_010 Hb_009070_010 Hb_000227_300--Hb_009070_010 Hb_004531_130 Hb_004531_130 Hb_000227_300--Hb_004531_130 Hb_000227_300--Hb_097292_010 Hb_007846_030--Hb_097292_010 Hb_005694_170 Hb_005694_170 Hb_007846_030--Hb_005694_170 Hb_007846_030--Hb_005731_040 Hb_003376_110 Hb_003376_110 Hb_007846_030--Hb_003376_110 Hb_000878_080 Hb_000878_080 Hb_007846_030--Hb_000878_080 Hb_000861_060--Hb_097292_010 Hb_000586_110 Hb_000586_110 Hb_000861_060--Hb_000586_110 Hb_000861_060--Hb_005731_040 Hb_000310_040 Hb_000310_040 Hb_000861_060--Hb_000310_040 Hb_097292_010--Hb_005731_040 Hb_097292_010--Hb_000586_110 Hb_097292_010--Hb_000878_080 Hb_005731_040--Hb_000586_110 Hb_003598_020 Hb_003598_020 Hb_005731_040--Hb_003598_020 Hb_026218_010 Hb_026218_010 Hb_005731_040--Hb_026218_010 Hb_001032_080 Hb_001032_080 Hb_051408_010--Hb_001032_080 Hb_051408_010--Hb_009070_010 Hb_001333_030 Hb_001333_030 Hb_051408_010--Hb_001333_030 Hb_002626_060 Hb_002626_060 Hb_051408_010--Hb_002626_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.442766 1.52434 2.05072 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.272949

CAGE analysis