Hb_007426_220

Information

Type -
Description -
Location Contig7426: 228327-233412
Sequence    

Annotation

kegg
ID rcu:RCOM_0229980
description Endoplasmic oxidoreductin-1 precursor, putative
nr
ID XP_002534381.1
description Endoplasmic oxidoreductin-1 precursor, putative [Ricinus communis]
swissprot
ID Q7X9I4
description Endoplasmic reticulum oxidoreductin-2 OS=Arabidopsis thaliana GN=AERO2 PE=1 SV=1
trembl
ID B9T812
description Endoplasmic oxidoreductin-1, putative OS=Ricinus communis GN=RCOM_0229980 PE=4 SV=1
Gene Ontology
ID GO:0005783
description endoplasmic oxidoreductin-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007426_220 0.0 - - Endoplasmic oxidoreductin-1 precursor, putative [Ricinus communis]
2 Hb_005903_020 0.0998352878 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
3 Hb_011671_340 0.1078715776 - - small GTPase [Hevea brasiliensis]
4 Hb_000620_020 0.1089976237 - - PREDICTED: uncharacterized protein LOC105649917 [Jatropha curcas]
5 Hb_001155_050 0.109073065 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
6 Hb_001511_030 0.1107615985 - - PREDICTED: inactive receptor-like serine/threonine-protein kinase At2g40270 [Jatropha curcas]
7 Hb_002871_040 0.1140165309 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Populus euphratica]
8 Hb_006438_020 0.1143287521 - - PREDICTED: lysine--tRNA ligase-like [Populus euphratica]
9 Hb_061256_010 0.1187031506 - - PREDICTED: uncharacterized protein LOC105635220 isoform X2 [Jatropha curcas]
10 Hb_000086_270 0.1220392553 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
11 Hb_000818_120 0.1241624539 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000526_010 0.1243885635 - - PREDICTED: uroporphyrinogen-III C-methyltransferase [Jatropha curcas]
13 Hb_000589_170 0.1291832505 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
14 Hb_006588_190 0.1298947614 - - PREDICTED: ataxin-3 homolog [Jatropha curcas]
15 Hb_000235_070 0.1301750663 - - PREDICTED: VIN3-like protein 2 [Jatropha curcas]
16 Hb_017193_010 0.1315308293 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
17 Hb_001160_110 0.1327665127 - - PREDICTED: kinesin-related protein 13 [Jatropha curcas]
18 Hb_011381_040 0.1336912821 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Jatropha curcas]
19 Hb_013405_070 0.1374267472 - - ferric-chelate reductase, putative [Ricinus communis]
20 Hb_001102_070 0.1385695851 transcription factor TF Family: STAT conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007426_220 Hb_007426_220 Hb_005903_020 Hb_005903_020 Hb_007426_220--Hb_005903_020 Hb_011671_340 Hb_011671_340 Hb_007426_220--Hb_011671_340 Hb_000620_020 Hb_000620_020 Hb_007426_220--Hb_000620_020 Hb_001155_050 Hb_001155_050 Hb_007426_220--Hb_001155_050 Hb_001511_030 Hb_001511_030 Hb_007426_220--Hb_001511_030 Hb_002871_040 Hb_002871_040 Hb_007426_220--Hb_002871_040 Hb_006438_020 Hb_006438_020 Hb_005903_020--Hb_006438_020 Hb_001232_090 Hb_001232_090 Hb_005903_020--Hb_001232_090 Hb_011716_010 Hb_011716_010 Hb_005903_020--Hb_011716_010 Hb_004108_210 Hb_004108_210 Hb_005903_020--Hb_004108_210 Hb_000926_060 Hb_000926_060 Hb_005903_020--Hb_000926_060 Hb_011671_340--Hb_001155_050 Hb_013405_070 Hb_013405_070 Hb_011671_340--Hb_013405_070 Hb_000800_020 Hb_000800_020 Hb_011671_340--Hb_000800_020 Hb_003271_040 Hb_003271_040 Hb_011671_340--Hb_003271_040 Hb_029253_010 Hb_029253_010 Hb_011671_340--Hb_029253_010 Hb_000620_020--Hb_002871_040 Hb_001102_070 Hb_001102_070 Hb_000620_020--Hb_001102_070 Hb_101334_020 Hb_101334_020 Hb_000620_020--Hb_101334_020 Hb_002783_190 Hb_002783_190 Hb_000620_020--Hb_002783_190 Hb_000620_020--Hb_006438_020 Hb_015778_040 Hb_015778_040 Hb_001155_050--Hb_015778_040 Hb_000818_120 Hb_000818_120 Hb_001155_050--Hb_000818_120 Hb_000589_170 Hb_000589_170 Hb_001155_050--Hb_000589_170 Hb_001155_050--Hb_029253_010 Hb_001511_030--Hb_000818_120 Hb_002249_170 Hb_002249_170 Hb_001511_030--Hb_002249_170 Hb_012545_030 Hb_012545_030 Hb_001511_030--Hb_012545_030 Hb_004659_010 Hb_004659_010 Hb_001511_030--Hb_004659_010 Hb_001511_030--Hb_001155_050 Hb_003835_110 Hb_003835_110 Hb_002871_040--Hb_003835_110 Hb_017193_010 Hb_017193_010 Hb_002871_040--Hb_017193_010 Hb_011381_040 Hb_011381_040 Hb_002871_040--Hb_011381_040 Hb_002627_040 Hb_002627_040 Hb_002871_040--Hb_002627_040 Hb_000579_080 Hb_000579_080 Hb_002871_040--Hb_000579_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0993518 0.321818 1.11722 0.446456 0.0859046 0.161931
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0826238 0.194977 0.241618 0.286469 0.335977

CAGE analysis