Hb_007426_230

Information

Type -
Description -
Location Contig7426: 234421-236966
Sequence    

Annotation

kegg
ID cic:CICLE_v10017932mg
description hypothetical protein
nr
ID XP_006449011.1
description hypothetical protein CICLE_v10017932mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4UIY2
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017932mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56562: 234421-237071
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007426_230 0.0 - - hypothetical protein CICLE_v10017932mg [Citrus clementina]
2 Hb_004195_160 0.0386419776 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
3 Hb_002097_110 0.0558504785 - - ankyrin repeat-containing protein, putative [Ricinus communis]
4 Hb_004440_090 0.0653431423 - - PREDICTED: phosphopantetheine adenylyltransferase [Jatropha curcas]
5 Hb_001030_120 0.0696613657 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
6 Hb_015001_020 0.0702961995 - - PREDICTED: la-related protein 6B [Jatropha curcas]
7 Hb_000398_180 0.070594179 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
8 Hb_000032_570 0.0707327362 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]
9 Hb_000221_220 0.0709855182 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
10 Hb_001377_290 0.0733708269 - - PREDICTED: cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial [Jatropha curcas]
11 Hb_000189_620 0.0739669605 - - hypothetical protein JCGZ_23450 [Jatropha curcas]
12 Hb_000172_370 0.0740998468 - - -
13 Hb_002603_100 0.0742542497 - - ATATH9, putative [Ricinus communis]
14 Hb_125000_010 0.0755848661 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
15 Hb_002609_110 0.0756713997 - - hypothetical protein JCGZ_08497 [Jatropha curcas]
16 Hb_004662_030 0.0758478871 - - hypothetical protein PRUPE_ppa012487mg [Prunus persica]
17 Hb_027472_180 0.0762363182 - - hypothetical protein L484_016229 [Morus notabilis]
18 Hb_000123_260 0.0762414405 - - PREDICTED: protein gar2 [Jatropha curcas]
19 Hb_028872_140 0.0762687511 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
20 Hb_010436_070 0.076415143 - - PREDICTED: endoribonuclease Dicer homolog 4-like [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_007426_230 Hb_007426_230 Hb_004195_160 Hb_004195_160 Hb_007426_230--Hb_004195_160 Hb_002097_110 Hb_002097_110 Hb_007426_230--Hb_002097_110 Hb_004440_090 Hb_004440_090 Hb_007426_230--Hb_004440_090 Hb_001030_120 Hb_001030_120 Hb_007426_230--Hb_001030_120 Hb_015001_020 Hb_015001_020 Hb_007426_230--Hb_015001_020 Hb_000398_180 Hb_000398_180 Hb_007426_230--Hb_000398_180 Hb_004195_160--Hb_000398_180 Hb_004195_160--Hb_001030_120 Hb_001377_290 Hb_001377_290 Hb_004195_160--Hb_001377_290 Hb_006332_020 Hb_006332_020 Hb_004195_160--Hb_006332_020 Hb_002609_110 Hb_002609_110 Hb_004195_160--Hb_002609_110 Hb_004662_030 Hb_004662_030 Hb_002097_110--Hb_004662_030 Hb_002097_110--Hb_015001_020 Hb_009711_030 Hb_009711_030 Hb_002097_110--Hb_009711_030 Hb_027472_180 Hb_027472_180 Hb_002097_110--Hb_027472_180 Hb_001824_070 Hb_001824_070 Hb_002097_110--Hb_001824_070 Hb_003005_020 Hb_003005_020 Hb_004440_090--Hb_003005_020 Hb_002391_300 Hb_002391_300 Hb_004440_090--Hb_002391_300 Hb_063716_050 Hb_063716_050 Hb_004440_090--Hb_063716_050 Hb_000046_280 Hb_000046_280 Hb_004440_090--Hb_000046_280 Hb_004440_090--Hb_000398_180 Hb_002686_270 Hb_002686_270 Hb_001030_120--Hb_002686_270 Hb_009111_050 Hb_009111_050 Hb_001030_120--Hb_009111_050 Hb_000032_570 Hb_000032_570 Hb_001030_120--Hb_000032_570 Hb_005062_070 Hb_005062_070 Hb_001030_120--Hb_005062_070 Hb_028872_140 Hb_028872_140 Hb_001030_120--Hb_028872_140 Hb_015001_020--Hb_004662_030 Hb_015001_020--Hb_028872_140 Hb_015001_020--Hb_000032_570 Hb_000853_110 Hb_000853_110 Hb_015001_020--Hb_000853_110 Hb_015001_020--Hb_005062_070 Hb_000398_180--Hb_028872_140 Hb_000398_180--Hb_001377_290 Hb_011689_080 Hb_011689_080 Hb_000398_180--Hb_011689_080 Hb_000398_180--Hb_006332_020 Hb_007380_070 Hb_007380_070 Hb_000398_180--Hb_007380_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.4038 13.8461 11.8289 13.2435 52.3625 50.9572
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.7766 55.3855 44.7421 21.9195 10.499

CAGE analysis