Hb_007432_070

Information

Type -
Description -
Location Contig7432: 58816-69970
Sequence    

Annotation

kegg
ID rcu:RCOM_1309310
description glutaminyl-tRNA synthetase, putative (EC:6.1.1.18)
nr
ID XP_012067060.1
description PREDICTED: glutamine--tRNA ligase [Jatropha curcas]
swissprot
ID P52780
description Glutamine--tRNA ligase OS=Lupinus luteus PE=2 SV=2
trembl
ID A0A067LDA3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01857 PE=3 SV=1
Gene Ontology
ID GO:0005737
description glutamine--trna ligase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56572: 58873-70015
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007432_070 0.0 - - PREDICTED: glutamine--tRNA ligase [Jatropha curcas]
2 Hb_003125_070 0.110576912 - - PREDICTED: serine/threonine-protein kinase rio1-like [Jatropha curcas]
3 Hb_027073_030 0.1106064094 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
4 Hb_001662_040 0.111455217 - - DNA helicase, putative [Ricinus communis]
5 Hb_002067_030 0.1128458408 - - PREDICTED: poly(ADP-ribose) glycohydrolase 1-like isoform X2 [Jatropha curcas]
6 Hb_000563_330 0.1137147826 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
7 Hb_001832_130 0.1152840803 - - PREDICTED: WD-40 repeat-containing protein MSI4 [Jatropha curcas]
8 Hb_000329_590 0.1159484467 - - catalytic, putative [Ricinus communis]
9 Hb_003994_140 0.116897361 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001408_100 0.1170611161 - - pseudouridylate synthase, putative [Ricinus communis]
11 Hb_000160_350 0.118705894 - - PREDICTED: double-stranded RNA-binding protein 4 isoform X3 [Vitis vinifera]
12 Hb_004128_200 0.1210090564 - - PREDICTED: uncharacterized protein LOC105642137 [Jatropha curcas]
13 Hb_003638_090 0.1217042512 - - PREDICTED: serine/arginine-rich splicing factor SR45a-like [Jatropha curcas]
14 Hb_006658_040 0.1225461574 - - hypothetical protein POPTR_0006s19640g [Populus trichocarpa]
15 Hb_005965_030 0.1235438539 - - hypothetical protein JCGZ_16415 [Jatropha curcas]
16 Hb_000098_140 0.1238686625 - - hypothetical protein JCGZ_04989 [Jatropha curcas]
17 Hb_000679_340 0.1242480397 - - PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]
18 Hb_021576_100 0.1252009349 - - Enoyl-CoA hydratase, mitochondrial precursor, putative [Ricinus communis]
19 Hb_001143_180 0.1252422784 - - PREDICTED: replication factor C subunit 5 [Jatropha curcas]
20 Hb_163591_010 0.1254591635 - - PREDICTED: amidase 1-like isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_007432_070 Hb_007432_070 Hb_003125_070 Hb_003125_070 Hb_007432_070--Hb_003125_070 Hb_027073_030 Hb_027073_030 Hb_007432_070--Hb_027073_030 Hb_001662_040 Hb_001662_040 Hb_007432_070--Hb_001662_040 Hb_002067_030 Hb_002067_030 Hb_007432_070--Hb_002067_030 Hb_000563_330 Hb_000563_330 Hb_007432_070--Hb_000563_330 Hb_001832_130 Hb_001832_130 Hb_007432_070--Hb_001832_130 Hb_003125_070--Hb_001832_130 Hb_001301_220 Hb_001301_220 Hb_003125_070--Hb_001301_220 Hb_000735_050 Hb_000735_050 Hb_003125_070--Hb_000735_050 Hb_003994_140 Hb_003994_140 Hb_003125_070--Hb_003994_140 Hb_003125_070--Hb_000563_330 Hb_000679_340 Hb_000679_340 Hb_003125_070--Hb_000679_340 Hb_002928_010 Hb_002928_010 Hb_027073_030--Hb_002928_010 Hb_003579_050 Hb_003579_050 Hb_027073_030--Hb_003579_050 Hb_000139_190 Hb_000139_190 Hb_027073_030--Hb_000139_190 Hb_039605_010 Hb_039605_010 Hb_027073_030--Hb_039605_010 Hb_004128_200 Hb_004128_200 Hb_027073_030--Hb_004128_200 Hb_000576_050 Hb_000576_050 Hb_027073_030--Hb_000576_050 Hb_163591_010 Hb_163591_010 Hb_001662_040--Hb_163591_010 Hb_000002_120 Hb_000002_120 Hb_001662_040--Hb_000002_120 Hb_000023_320 Hb_000023_320 Hb_001662_040--Hb_000023_320 Hb_001662_040--Hb_002067_030 Hb_000371_010 Hb_000371_010 Hb_001662_040--Hb_000371_010 Hb_000098_140 Hb_000098_140 Hb_001662_040--Hb_000098_140 Hb_002067_030--Hb_000098_140 Hb_154580_010 Hb_154580_010 Hb_002067_030--Hb_154580_010 Hb_001636_050 Hb_001636_050 Hb_002067_030--Hb_001636_050 Hb_000260_680 Hb_000260_680 Hb_002067_030--Hb_000260_680 Hb_013394_030 Hb_013394_030 Hb_002067_030--Hb_013394_030 Hb_000329_590 Hb_000329_590 Hb_002067_030--Hb_000329_590 Hb_006452_160 Hb_006452_160 Hb_000563_330--Hb_006452_160 Hb_002739_130 Hb_002739_130 Hb_000563_330--Hb_002739_130 Hb_000563_330--Hb_003994_140 Hb_000563_330--Hb_039605_010 Hb_058551_010 Hb_058551_010 Hb_000563_330--Hb_058551_010 Hb_016734_090 Hb_016734_090 Hb_000563_330--Hb_016734_090 Hb_001832_130--Hb_001301_220 Hb_005965_030 Hb_005965_030 Hb_001832_130--Hb_005965_030 Hb_002374_320 Hb_002374_320 Hb_001832_130--Hb_002374_320 Hb_000960_050 Hb_000960_050 Hb_001832_130--Hb_000960_050 Hb_001143_180 Hb_001143_180 Hb_001832_130--Hb_001143_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.0793 22.553 37.0699 7.56539 24.5747 23.3127
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.1926 10.7742 6.48868 13.8902 8.12379

CAGE analysis