Hb_007437_010

Information

Type -
Description -
Location Contig7437: 66731-68525
Sequence    

Annotation

kegg
ID rcu:RCOM_1267840
description Polygalacturonase precursor, putative (EC:3.2.1.67)
nr
ID XP_002529092.1
description Polygalacturonase precursor, putative [Ricinus communis]
swissprot
ID P48979
description Polygalacturonase OS=Prunus persica PE=2 SV=1
trembl
ID B9SSX3
description Polygalacturonase, putative OS=Ricinus communis GN=RCOM_1267840 PE=3 SV=1
Gene Ontology
ID GO:0005576
description polygalacturonase precursor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007437_010 0.0 - - Polygalacturonase precursor, putative [Ricinus communis]
2 Hb_006415_020 0.0105385261 - - PREDICTED: nucleobase-ascorbate transporter 4-like [Jatropha curcas]
3 Hb_005726_030 0.034830386 - - hypothetical protein CISIN_1g020511mg [Citrus sinensis]
4 Hb_061590_010 0.036104605 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
5 Hb_038238_010 0.0394158487 - - hypothetical protein POPTR_0001s30980g [Populus trichocarpa]
6 Hb_187247_010 0.0487864916 - - PREDICTED: cytochrome P450 86B1-like [Jatropha curcas]
7 Hb_106528_020 0.0527370302 - - Cationic peroxidase 2 precursor [Theobroma cacao]
8 Hb_007337_010 0.0600375599 - - PREDICTED: putative receptor protein kinase ZmPK1 [Jatropha curcas]
9 Hb_143766_040 0.061452877 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
10 Hb_004981_020 0.0642976363 - - PREDICTED: uncharacterized protein LOC103706119 [Phoenix dactylifera]
11 Hb_004190_030 0.0689139833 - - unnamed protein product [Vitis vinifera]
12 Hb_000692_270 0.072072952 - - PREDICTED: ornithine decarboxylase-like [Jatropha curcas]
13 Hb_010358_010 0.0745457761 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
14 Hb_153208_010 0.0763205898 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
15 Hb_000008_130 0.0768214829 - - PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]
16 Hb_000013_040 0.0768214829 - - -
17 Hb_000013_070 0.0768214829 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_000014_180 0.0768214829 - - PREDICTED: endo-1,4-beta-xylanase D-like [Fragaria vesca subsp. vesca]
19 Hb_000021_080 0.0768214829 - - -
20 Hb_000031_270 0.0768214829 transcription factor TF Family: B3 DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_007437_010 Hb_007437_010 Hb_006415_020 Hb_006415_020 Hb_007437_010--Hb_006415_020 Hb_005726_030 Hb_005726_030 Hb_007437_010--Hb_005726_030 Hb_061590_010 Hb_061590_010 Hb_007437_010--Hb_061590_010 Hb_038238_010 Hb_038238_010 Hb_007437_010--Hb_038238_010 Hb_187247_010 Hb_187247_010 Hb_007437_010--Hb_187247_010 Hb_106528_020 Hb_106528_020 Hb_007437_010--Hb_106528_020 Hb_006415_020--Hb_038238_010 Hb_006415_020--Hb_005726_030 Hb_006415_020--Hb_061590_010 Hb_006415_020--Hb_187247_010 Hb_006415_020--Hb_106528_020 Hb_005726_030--Hb_061590_010 Hb_005726_030--Hb_187247_010 Hb_007337_010 Hb_007337_010 Hb_005726_030--Hb_007337_010 Hb_143766_040 Hb_143766_040 Hb_005726_030--Hb_143766_040 Hb_004981_020 Hb_004981_020 Hb_005726_030--Hb_004981_020 Hb_061590_010--Hb_187247_010 Hb_061590_010--Hb_007337_010 Hb_061590_010--Hb_143766_040 Hb_061590_010--Hb_004981_020 Hb_038238_010--Hb_106528_020 Hb_038238_010--Hb_005726_030 Hb_038238_010--Hb_061590_010 Hb_038238_010--Hb_187247_010 Hb_187247_010--Hb_007337_010 Hb_187247_010--Hb_143766_040 Hb_187247_010--Hb_004981_020 Hb_187247_010--Hb_106528_020 Hb_106528_020--Hb_005726_030 Hb_106528_020--Hb_061590_010 Hb_010358_010 Hb_010358_010 Hb_106528_020--Hb_010358_010 Hb_153208_010 Hb_153208_010 Hb_106528_020--Hb_153208_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.54197 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 45.5715 0

CAGE analysis