Hb_007441_080

Information

Type -
Description -
Location Contig7441: 40058-46092
Sequence    

Annotation

kegg
ID rcu:RCOM_0658160
description ELMO domain-containing protein, putative
nr
ID XP_012083715.1
description PREDICTED: ELMO domain-containing protein C-like [Jatropha curcas]
swissprot
ID Q54YW1
description ELMO domain-containing protein A OS=Dictyostelium discoideum GN=elmoA PE=1 SV=1
trembl
ID A0A067JYB1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14643 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56595: 40070-46192
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007441_080 0.0 - - PREDICTED: ELMO domain-containing protein C-like [Jatropha curcas]
2 Hb_002110_100 0.0909410236 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
3 Hb_000742_020 0.1019765015 - - ARF GTPase activator, putative [Ricinus communis]
4 Hb_000684_030 0.1053050607 - - syntaxin, putative [Ricinus communis]
5 Hb_003602_060 0.1060107625 - - PREDICTED: phosphoglycerate mutase-like protein 1 [Jatropha curcas]
6 Hb_000590_120 0.1084852173 - - dehydroascorbate reductase, putative [Ricinus communis]
7 Hb_003875_030 0.1100342345 - - PREDICTED: probable plastidic glucose transporter 1 [Jatropha curcas]
8 Hb_011671_260 0.1104386696 - - PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]
9 Hb_185830_060 0.1115775674 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
10 Hb_000017_260 0.1116862145 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
11 Hb_004965_110 0.1129041971 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
12 Hb_027506_040 0.113804114 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
13 Hb_011606_020 0.1145709036 - - hypothetical protein CISIN_1g023687mg [Citrus sinensis]
14 Hb_001663_040 0.1172472468 - - hypothetical protein B456_007G162000 [Gossypium raimondii]
15 Hb_003266_030 0.1180618996 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
16 Hb_002615_030 0.1190131904 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A-like [Populus euphratica]
17 Hb_003453_050 0.1193622263 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-3-like [Jatropha curcas]
18 Hb_002193_060 0.1194480922 - - PREDICTED: uncharacterized protein C4orf29 homolog [Pyrus x bretschneideri]
19 Hb_007192_030 0.1203510019 - - PREDICTED: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase [Jatropha curcas]
20 Hb_000023_310 0.1203838979 - - PREDICTED: probable folate-biopterin transporter 2 [Populus euphratica]

Gene co-expression network

sample Hb_007441_080 Hb_007441_080 Hb_002110_100 Hb_002110_100 Hb_007441_080--Hb_002110_100 Hb_000742_020 Hb_000742_020 Hb_007441_080--Hb_000742_020 Hb_000684_030 Hb_000684_030 Hb_007441_080--Hb_000684_030 Hb_003602_060 Hb_003602_060 Hb_007441_080--Hb_003602_060 Hb_000590_120 Hb_000590_120 Hb_007441_080--Hb_000590_120 Hb_003875_030 Hb_003875_030 Hb_007441_080--Hb_003875_030 Hb_032920_070 Hb_032920_070 Hb_002110_100--Hb_032920_070 Hb_003305_040 Hb_003305_040 Hb_002110_100--Hb_003305_040 Hb_002392_010 Hb_002392_010 Hb_002110_100--Hb_002392_010 Hb_004158_020 Hb_004158_020 Hb_002110_100--Hb_004158_020 Hb_005653_070 Hb_005653_070 Hb_002110_100--Hb_005653_070 Hb_005701_120 Hb_005701_120 Hb_002110_100--Hb_005701_120 Hb_013394_050 Hb_013394_050 Hb_000742_020--Hb_013394_050 Hb_001609_040 Hb_001609_040 Hb_000742_020--Hb_001609_040 Hb_005993_010 Hb_005993_010 Hb_000742_020--Hb_005993_010 Hb_000069_640 Hb_000069_640 Hb_000742_020--Hb_000069_640 Hb_000244_170 Hb_000244_170 Hb_000742_020--Hb_000244_170 Hb_001221_030 Hb_001221_030 Hb_000684_030--Hb_001221_030 Hb_000057_110 Hb_000057_110 Hb_000684_030--Hb_000057_110 Hb_000174_260 Hb_000174_260 Hb_000684_030--Hb_000174_260 Hb_003266_030 Hb_003266_030 Hb_000684_030--Hb_003266_030 Hb_000200_300 Hb_000200_300 Hb_000684_030--Hb_000200_300 Hb_003605_020 Hb_003605_020 Hb_000684_030--Hb_003605_020 Hb_154038_020 Hb_154038_020 Hb_003602_060--Hb_154038_020 Hb_093458_010 Hb_093458_010 Hb_003602_060--Hb_093458_010 Hb_027506_040 Hb_027506_040 Hb_003602_060--Hb_027506_040 Hb_001863_070 Hb_001863_070 Hb_003602_060--Hb_001863_070 Hb_002007_320 Hb_002007_320 Hb_003602_060--Hb_002007_320 Hb_001662_130 Hb_001662_130 Hb_000590_120--Hb_001662_130 Hb_000240_030 Hb_000240_030 Hb_000590_120--Hb_000240_030 Hb_066842_010 Hb_066842_010 Hb_000590_120--Hb_066842_010 Hb_001269_190 Hb_001269_190 Hb_000590_120--Hb_001269_190 Hb_000590_120--Hb_002110_100 Hb_004951_060 Hb_004951_060 Hb_000590_120--Hb_004951_060 Hb_001663_040 Hb_001663_040 Hb_003875_030--Hb_001663_040 Hb_171718_010 Hb_171718_010 Hb_003875_030--Hb_171718_010 Hb_001946_380 Hb_001946_380 Hb_003875_030--Hb_001946_380 Hb_000585_110 Hb_000585_110 Hb_003875_030--Hb_000585_110 Hb_055690_010 Hb_055690_010 Hb_003875_030--Hb_055690_010 Hb_008375_010 Hb_008375_010 Hb_003875_030--Hb_008375_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.61621 6.38343 18.442 24.6902 2.0776 3.74732
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7252 11.0645 13.3973 7.5058 18.611

CAGE analysis