Hb_007441_120

Information

Type -
Description -
Location Contig7441: 65358-72632
Sequence    

Annotation

kegg
ID rcu:RCOM_0658290
description glycosyltransferase, putative
nr
ID XP_012083718.1
description PREDICTED: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X2 [Jatropha curcas]
swissprot
ID A8MR93
description Dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase OS=Arabidopsis thaliana GN=ALG12 PE=1 SV=1
trembl
ID A0A067JY30
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14647 PE=4 SV=1
Gene Ontology
ID GO:0016757
description dol-p-man:man c -pp-dol alpha- -mannosyltransferase isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56605: 65378-72023 , PASA_asmbl_56607: 72140-72586
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007441_120 0.0 - - PREDICTED: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X2 [Jatropha curcas]
2 Hb_005663_060 0.0583749711 - - PREDICTED: uncharacterized protein LOC105770600 [Gossypium raimondii]
3 Hb_002016_110 0.0603427098 - - transducin family protein [Populus trichocarpa]
4 Hb_028872_140 0.064202529 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
5 Hb_000445_420 0.064473169 - - protein transporter, putative [Ricinus communis]
6 Hb_004055_030 0.0647105742 - - casein kinase, putative [Ricinus communis]
7 Hb_006922_100 0.0649668258 - - PREDICTED: uncharacterized protein LOC105645470 isoform X1 [Jatropha curcas]
8 Hb_001199_020 0.0669215366 - - hypothetical protein JCGZ_25565 [Jatropha curcas]
9 Hb_001818_090 0.0692846627 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002026_180 0.0695188637 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
11 Hb_003032_040 0.0697221001 - - PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 25 [Jatropha curcas]
12 Hb_002811_360 0.0698427635 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
13 Hb_000041_050 0.0698746352 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
14 Hb_001248_130 0.0703610264 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
15 Hb_004109_090 0.070793274 - - ubiquitin-protein ligase, putative [Ricinus communis]
16 Hb_000483_200 0.0712631804 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
17 Hb_011689_080 0.0743214995 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
18 Hb_001604_010 0.0745023661 - - 14-3-3 protein, putative [Ricinus communis]
19 Hb_061090_010 0.0746539412 - - RAN BINDING protein 1 [Populus trichocarpa]
20 Hb_004724_200 0.0753959358 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]

Gene co-expression network

sample Hb_007441_120 Hb_007441_120 Hb_005663_060 Hb_005663_060 Hb_007441_120--Hb_005663_060 Hb_002016_110 Hb_002016_110 Hb_007441_120--Hb_002016_110 Hb_028872_140 Hb_028872_140 Hb_007441_120--Hb_028872_140 Hb_000445_420 Hb_000445_420 Hb_007441_120--Hb_000445_420 Hb_004055_030 Hb_004055_030 Hb_007441_120--Hb_004055_030 Hb_006922_100 Hb_006922_100 Hb_007441_120--Hb_006922_100 Hb_003092_040 Hb_003092_040 Hb_005663_060--Hb_003092_040 Hb_032202_190 Hb_032202_190 Hb_005663_060--Hb_032202_190 Hb_005663_060--Hb_006922_100 Hb_005663_060--Hb_002016_110 Hb_000409_020 Hb_000409_020 Hb_005663_060--Hb_000409_020 Hb_006915_050 Hb_006915_050 Hb_002016_110--Hb_006915_050 Hb_002026_180 Hb_002026_180 Hb_002016_110--Hb_002026_180 Hb_189003_080 Hb_189003_080 Hb_002016_110--Hb_189003_080 Hb_000030_300 Hb_000030_300 Hb_002016_110--Hb_000030_300 Hb_001454_210 Hb_001454_210 Hb_028872_140--Hb_001454_210 Hb_000398_180 Hb_000398_180 Hb_028872_140--Hb_000398_180 Hb_033642_010 Hb_033642_010 Hb_028872_140--Hb_033642_010 Hb_009111_050 Hb_009111_050 Hb_028872_140--Hb_009111_050 Hb_002811_360 Hb_002811_360 Hb_028872_140--Hb_002811_360 Hb_015306_020 Hb_015306_020 Hb_028872_140--Hb_015306_020 Hb_000445_420--Hb_005663_060 Hb_000445_420--Hb_002016_110 Hb_000445_420--Hb_004055_030 Hb_000445_420--Hb_006922_100 Hb_010931_120 Hb_010931_120 Hb_000445_420--Hb_010931_120 Hb_004055_030--Hb_006922_100 Hb_001124_160 Hb_001124_160 Hb_004055_030--Hb_001124_160 Hb_003813_130 Hb_003813_130 Hb_004055_030--Hb_003813_130 Hb_001199_020 Hb_001199_020 Hb_004055_030--Hb_001199_020 Hb_000020_190 Hb_000020_190 Hb_006922_100--Hb_000020_190 Hb_001862_190 Hb_001862_190 Hb_006922_100--Hb_001862_190 Hb_006922_100--Hb_001199_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.0492 11.5946 11.0585 15.0678 24.6825 36.1587
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.2845 25.9763 32.6912 20.304 11.8629

CAGE analysis