Hb_007441_130

Information

Type -
Description -
Location Contig7441: 73066-76279
Sequence    

Annotation

kegg
ID rcu:RCOM_0658300
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002526471.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q8LPS6
description Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana GN=At1g02150 PE=2 SV=2
trembl
ID B9SKK8
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0658300 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at1g02150

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56607: 72140-72586 , PASA_asmbl_56608: 73246-75958
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007441_130 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_000044_040 0.0648772444 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
3 Hb_000008_290 0.0702147145 - - PREDICTED: protein SAND [Jatropha curcas]
4 Hb_023480_010 0.0736177421 - - cellular nucleic acid binding protein, putative [Ricinus communis]
5 Hb_004097_070 0.0754802763 - - PREDICTED: F-box protein At2g26160-like [Jatropha curcas]
6 Hb_007062_020 0.0755003868 - - gcn4-complementing protein, putative [Ricinus communis]
7 Hb_006909_070 0.0815687204 - - ABC transporter family protein [Hevea brasiliensis]
8 Hb_000252_050 0.0825301538 - - PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Jatropha curcas]
9 Hb_021443_040 0.0831637634 - - acc synthase, putative [Ricinus communis]
10 Hb_001329_140 0.0832247179 - - PREDICTED: zinc finger protein 598 [Jatropha curcas]
11 Hb_003438_050 0.0833038965 - - PREDICTED: rab3 GTPase-activating protein catalytic subunit isoform X2 [Jatropha curcas]
12 Hb_004218_280 0.0843925027 - - Exoenzymes regulatory protein aepA precursor, putative [Ricinus communis]
13 Hb_001268_280 0.0845816524 - - conserved hypothetical protein [Ricinus communis]
14 Hb_048476_180 0.0851113163 - - PREDICTED: nuclear pore complex protein NUP155 [Jatropha curcas]
15 Hb_188063_020 0.0854541022 - - conserved hypothetical protein [Ricinus communis]
16 Hb_008024_030 0.0856174954 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105648348 [Jatropha curcas]
17 Hb_027380_140 0.0860335687 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
18 Hb_004963_030 0.0860388995 - - PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial [Jatropha curcas]
19 Hb_000983_150 0.08640145 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
20 Hb_001789_190 0.086519633 - - PREDICTED: uncharacterized protein LOC105648441 [Jatropha curcas]

Gene co-expression network

sample Hb_007441_130 Hb_007441_130 Hb_000044_040 Hb_000044_040 Hb_007441_130--Hb_000044_040 Hb_000008_290 Hb_000008_290 Hb_007441_130--Hb_000008_290 Hb_023480_010 Hb_023480_010 Hb_007441_130--Hb_023480_010 Hb_004097_070 Hb_004097_070 Hb_007441_130--Hb_004097_070 Hb_007062_020 Hb_007062_020 Hb_007441_130--Hb_007062_020 Hb_006909_070 Hb_006909_070 Hb_007441_130--Hb_006909_070 Hb_000134_270 Hb_000134_270 Hb_000044_040--Hb_000134_270 Hb_001268_280 Hb_001268_280 Hb_000044_040--Hb_001268_280 Hb_021443_040 Hb_021443_040 Hb_000044_040--Hb_021443_040 Hb_001500_050 Hb_001500_050 Hb_000044_040--Hb_001500_050 Hb_000044_040--Hb_004097_070 Hb_002815_030 Hb_002815_030 Hb_000008_290--Hb_002815_030 Hb_000592_030 Hb_000592_030 Hb_000008_290--Hb_000592_030 Hb_000890_060 Hb_000890_060 Hb_000008_290--Hb_000890_060 Hb_000613_050 Hb_000613_050 Hb_000008_290--Hb_000613_050 Hb_000617_180 Hb_000617_180 Hb_000008_290--Hb_000617_180 Hb_123903_010 Hb_123903_010 Hb_000008_290--Hb_123903_010 Hb_003680_150 Hb_003680_150 Hb_023480_010--Hb_003680_150 Hb_000983_150 Hb_000983_150 Hb_023480_010--Hb_000983_150 Hb_000544_090 Hb_000544_090 Hb_023480_010--Hb_000544_090 Hb_002684_040 Hb_002684_040 Hb_023480_010--Hb_002684_040 Hb_003025_110 Hb_003025_110 Hb_023480_010--Hb_003025_110 Hb_000853_230 Hb_000853_230 Hb_023480_010--Hb_000853_230 Hb_001789_190 Hb_001789_190 Hb_004097_070--Hb_001789_190 Hb_000200_380 Hb_000200_380 Hb_004097_070--Hb_000200_380 Hb_007657_010 Hb_007657_010 Hb_004097_070--Hb_007657_010 Hb_000346_060 Hb_000346_060 Hb_004097_070--Hb_000346_060 Hb_019280_030 Hb_019280_030 Hb_004097_070--Hb_019280_030 Hb_001635_040 Hb_001635_040 Hb_004097_070--Hb_001635_040 Hb_000785_040 Hb_000785_040 Hb_007062_020--Hb_000785_040 Hb_027380_140 Hb_027380_140 Hb_007062_020--Hb_027380_140 Hb_001269_210 Hb_001269_210 Hb_007062_020--Hb_001269_210 Hb_000470_070 Hb_000470_070 Hb_007062_020--Hb_000470_070 Hb_009296_010 Hb_009296_010 Hb_007062_020--Hb_009296_010 Hb_012053_080 Hb_012053_080 Hb_007062_020--Hb_012053_080 Hb_006909_070--Hb_004097_070 Hb_000107_210 Hb_000107_210 Hb_006909_070--Hb_000107_210 Hb_007943_110 Hb_007943_110 Hb_006909_070--Hb_007943_110 Hb_007919_100 Hb_007919_100 Hb_006909_070--Hb_007919_100 Hb_002947_030 Hb_002947_030 Hb_006909_070--Hb_002947_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.1799 9.11922 7.95552 9.321 11.8016 15.1743
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.11471 6.23265 7.42218 9.96276 14.7025

CAGE analysis