Hb_007441_150

Information

Type -
Description -
Location Contig7441: 81305-86847
Sequence    

Annotation

kegg
ID tcc:TCM_005770
description Ankyrin repeat family protein
nr
ID XP_007052376.1
description Ankyrin repeat family protein [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061E2M2
description Ankyrin repeat family protein OS=Theobroma cacao GN=TCM_005770 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007441_150 0.0 - - Ankyrin repeat family protein [Theobroma cacao]
2 Hb_000024_020 0.08538819 - - PREDICTED: uncharacterized protein LOC105636896 [Jatropha curcas]
3 Hb_001894_060 0.0937382522 - - PREDICTED: uncharacterized protein LOC105644596 [Jatropha curcas]
4 Hb_000988_020 0.0969275196 - - PREDICTED: transcription factor bHLH112 isoform X2 [Jatropha curcas]
5 Hb_032260_100 0.0999043253 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
6 Hb_000805_150 0.1115969593 transcription factor TF Family: GRAS transcription factor, putative [Ricinus communis]
7 Hb_029622_080 0.1161748266 transcription factor TF Family: AP2 hypothetical protein JCGZ_26299 [Jatropha curcas]
8 Hb_005282_010 0.1168170899 - - PREDICTED: probable xyloglucan glycosyltransferase 12 [Populus euphratica]
9 Hb_000529_050 0.1194084806 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
10 Hb_005656_200 0.1196554664 - - Cation transport protein chaC, putative [Ricinus communis]
11 Hb_000221_280 0.1231316802 - - PREDICTED: protein EXORDIUM-like [Populus euphratica]
12 Hb_029238_020 0.1261223712 - - PREDICTED: expansin-like A1 [Jatropha curcas]
13 Hb_000032_230 0.1264934927 transcription factor TF Family: ERF hypothetical protein JCGZ_20463 [Jatropha curcas]
14 Hb_009476_010 0.1266330998 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]
15 Hb_002234_200 0.1267120578 - - PREDICTED: inactive rhomboid protein 1 [Jatropha curcas]
16 Hb_096930_010 0.1280101151 - - hypothetical protein JCGZ_27059 [Jatropha curcas]
17 Hb_000373_250 0.1286160354 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]
18 Hb_160576_010 0.1314718199 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
19 Hb_001477_080 0.132518904 - - hypothetical protein POPTR_0017s04860g [Populus trichocarpa]
20 Hb_000313_190 0.133187342 - - PREDICTED: uncharacterized protein LOC105636896 [Jatropha curcas]

Gene co-expression network

sample Hb_007441_150 Hb_007441_150 Hb_000024_020 Hb_000024_020 Hb_007441_150--Hb_000024_020 Hb_001894_060 Hb_001894_060 Hb_007441_150--Hb_001894_060 Hb_000988_020 Hb_000988_020 Hb_007441_150--Hb_000988_020 Hb_032260_100 Hb_032260_100 Hb_007441_150--Hb_032260_100 Hb_000805_150 Hb_000805_150 Hb_007441_150--Hb_000805_150 Hb_029622_080 Hb_029622_080 Hb_007441_150--Hb_029622_080 Hb_113396_010 Hb_113396_010 Hb_000024_020--Hb_113396_010 Hb_002218_080 Hb_002218_080 Hb_000024_020--Hb_002218_080 Hb_001310_080 Hb_001310_080 Hb_000024_020--Hb_001310_080 Hb_000567_110 Hb_000567_110 Hb_000024_020--Hb_000567_110 Hb_004112_050 Hb_004112_050 Hb_000024_020--Hb_004112_050 Hb_158926_010 Hb_158926_010 Hb_001894_060--Hb_158926_010 Hb_000808_090 Hb_000808_090 Hb_001894_060--Hb_000808_090 Hb_001894_060--Hb_029622_080 Hb_001894_060--Hb_032260_100 Hb_101058_020 Hb_101058_020 Hb_001894_060--Hb_101058_020 Hb_000373_250 Hb_000373_250 Hb_000988_020--Hb_000373_250 Hb_032920_040 Hb_032920_040 Hb_000988_020--Hb_032920_040 Hb_000988_020--Hb_000805_150 Hb_078901_010 Hb_078901_010 Hb_000988_020--Hb_078901_010 Hb_005282_010 Hb_005282_010 Hb_000988_020--Hb_005282_010 Hb_032260_100--Hb_029622_080 Hb_000656_350 Hb_000656_350 Hb_032260_100--Hb_000656_350 Hb_000529_050 Hb_000529_050 Hb_032260_100--Hb_000529_050 Hb_032260_100--Hb_000808_090 Hb_000571_030 Hb_000571_030 Hb_032260_100--Hb_000571_030 Hb_000245_270 Hb_000245_270 Hb_000805_150--Hb_000245_270 Hb_000805_150--Hb_078901_010 Hb_116349_090 Hb_116349_090 Hb_000805_150--Hb_116349_090 Hb_011287_020 Hb_011287_020 Hb_000805_150--Hb_011287_020 Hb_009476_010 Hb_009476_010 Hb_000805_150--Hb_009476_010 Hb_029622_080--Hb_000808_090 Hb_029622_080--Hb_000656_350 Hb_000221_280 Hb_000221_280 Hb_029622_080--Hb_000221_280 Hb_029622_080--Hb_000571_030 Hb_001257_040 Hb_001257_040 Hb_029622_080--Hb_001257_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.156264 53.3823 16.6779 22.2058 0.0587455 0.0715267
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.781225 0.961959 0.600689 1.18516 5.90679

CAGE analysis