Hb_007441_160

Information

Type -
Description -
Location Contig7441: 96288-101741
Sequence    

Annotation

kegg
ID rcu:RCOM_0658490
description RNA binding protein, putative
nr
ID XP_002526479.1
description RNA binding protein, putative [Ricinus communis]
swissprot
ID Q7TP47
description Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus GN=Syncrip PE=2 SV=1
trembl
ID B9SKE9
description RNA binding protein, putative OS=Ricinus communis GN=RCOM_0658490 PE=4 SV=1
Gene Ontology
ID GO:0000166
description rna-binding family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56616: 96288-101744 , PASA_asmbl_56617: 96288-101744
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007441_160 0.0 - - RNA binding protein, putative [Ricinus communis]
2 Hb_005186_040 0.0597098808 - - PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X2 [Jatropha curcas]
3 Hb_000672_040 0.0603745402 - - PREDICTED: ENHANCER OF AG-4 protein 2 [Jatropha curcas]
4 Hb_001999_290 0.0682818816 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
5 Hb_000640_040 0.0698371532 - - PREDICTED: bromodomain and WD repeat-containing protein 1 isoform X2 [Jatropha curcas]
6 Hb_001865_070 0.0701248564 - - PREDICTED: uncharacterized protein LOC105647937 isoform X1 [Jatropha curcas]
7 Hb_012244_020 0.0739530377 - - calpain, putative [Ricinus communis]
8 Hb_004705_020 0.0748975165 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3 [Jatropha curcas]
9 Hb_005977_070 0.0761901802 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
10 Hb_001925_060 0.0781335015 - - PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Jatropha curcas]
11 Hb_006531_020 0.0781932706 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
12 Hb_001628_070 0.0784076691 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_005582_040 0.0786252879 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
14 Hb_001488_180 0.0788448739 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
15 Hb_004208_050 0.0788752047 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
16 Hb_001377_100 0.079147967 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
17 Hb_004079_060 0.0803153698 - - hypothetical protein JCGZ_07228 [Jatropha curcas]
18 Hb_004374_110 0.0811819692 - - PREDICTED: uncharacterized protein LOC105645768 [Jatropha curcas]
19 Hb_001648_020 0.082044985 - - hypothetical protein POPTR_0007s07750g [Populus trichocarpa]
20 Hb_007472_090 0.0820778481 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_007441_160 Hb_007441_160 Hb_005186_040 Hb_005186_040 Hb_007441_160--Hb_005186_040 Hb_000672_040 Hb_000672_040 Hb_007441_160--Hb_000672_040 Hb_001999_290 Hb_001999_290 Hb_007441_160--Hb_001999_290 Hb_000640_040 Hb_000640_040 Hb_007441_160--Hb_000640_040 Hb_001865_070 Hb_001865_070 Hb_007441_160--Hb_001865_070 Hb_012244_020 Hb_012244_020 Hb_007441_160--Hb_012244_020 Hb_005186_040--Hb_012244_020 Hb_001648_020 Hb_001648_020 Hb_005186_040--Hb_001648_020 Hb_002521_020 Hb_002521_020 Hb_005186_040--Hb_002521_020 Hb_005186_040--Hb_000672_040 Hb_001377_100 Hb_001377_100 Hb_005186_040--Hb_001377_100 Hb_005736_020 Hb_005736_020 Hb_000672_040--Hb_005736_020 Hb_001227_080 Hb_001227_080 Hb_000672_040--Hb_001227_080 Hb_011671_410 Hb_011671_410 Hb_000672_040--Hb_011671_410 Hb_005486_030 Hb_005486_030 Hb_000672_040--Hb_005486_030 Hb_001157_240 Hb_001157_240 Hb_001999_290--Hb_001157_240 Hb_000174_270 Hb_000174_270 Hb_001999_290--Hb_000174_270 Hb_004079_060 Hb_004079_060 Hb_001999_290--Hb_004079_060 Hb_001999_290--Hb_005736_020 Hb_001004_060 Hb_001004_060 Hb_001999_290--Hb_001004_060 Hb_062226_070 Hb_062226_070 Hb_001999_290--Hb_062226_070 Hb_001716_040 Hb_001716_040 Hb_000640_040--Hb_001716_040 Hb_002542_110 Hb_002542_110 Hb_000640_040--Hb_002542_110 Hb_005582_040 Hb_005582_040 Hb_000640_040--Hb_005582_040 Hb_000640_040--Hb_001157_240 Hb_010068_080 Hb_010068_080 Hb_000640_040--Hb_010068_080 Hb_001304_110 Hb_001304_110 Hb_000640_040--Hb_001304_110 Hb_002686_090 Hb_002686_090 Hb_001865_070--Hb_002686_090 Hb_005977_070 Hb_005977_070 Hb_001865_070--Hb_005977_070 Hb_001865_070--Hb_000672_040 Hb_001865_070--Hb_005736_020 Hb_001865_070--Hb_001157_240 Hb_011174_020 Hb_011174_020 Hb_012244_020--Hb_011174_020 Hb_000363_300 Hb_000363_300 Hb_012244_020--Hb_000363_300 Hb_012244_020--Hb_001648_020 Hb_000925_090 Hb_000925_090 Hb_012244_020--Hb_000925_090 Hb_000934_210 Hb_000934_210 Hb_012244_020--Hb_000934_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.8055 43.6281 20.5427 24.1417 24.1119 25.3713
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.692 17.2725 30.5655 36.8063 48.9208

CAGE analysis