Hb_007441_180

Information

Type -
Description -
Location Contig7441: 112026-114495
Sequence    

Annotation

kegg
ID rcu:RCOM_0658520
description hypothetical protein
nr
ID XP_002526482.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SKF2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0658520 PE=4 SV=1
Gene Ontology
ID GO:0006301
description cytochrome c oxidase-assembly factor mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56623: 111982-115513
cDNA
(Sanger)
(ID:Location)		 012_A03.ab1: 111982-114471 , 025_F12r.ab1: 114417-115176 , 031_L21.ab1: 111982-114471

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007441_180 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001621_180 0.090273382 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-1 [Jatropha curcas]
3 Hb_001104_120 0.0939739114 - - -
4 Hb_000563_590 0.0964702649 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
5 Hb_009252_130 0.0972252477 - - Deletion of SUV3 suppressor 1(I) isoform 1 [Theobroma cacao]
6 Hb_000190_060 0.1080863853 - - PREDICTED: uncharacterized protein LOC105644688 isoform X1 [Jatropha curcas]
7 Hb_002234_210 0.1099301482 - - hypothetical protein POPTR_0012s13380g [Populus trichocarpa]
8 Hb_000061_160 0.1163504874 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
9 Hb_001454_330 0.1186886487 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
10 Hb_001035_030 0.1188866935 - - PREDICTED: probable rhamnogalacturonate lyase B isoform X1 [Jatropha curcas]
11 Hb_001214_030 0.1203861284 - - hypothetical protein POPTR_0006s10280g [Populus trichocarpa]
12 Hb_034585_040 0.1222911814 - - PREDICTED: nuclear pore complex protein NUP58 [Jatropha curcas]
13 Hb_001616_020 0.12593647 - - PREDICTED: wound-induced basic protein [Jatropha curcas]
14 Hb_000025_290 0.1265957715 - - Uncharacterized protein TCM_031320 [Theobroma cacao]
15 Hb_001252_140 0.1271178517 - - catalytic, putative [Ricinus communis]
16 Hb_005276_100 0.1292965701 - - PREDICTED: uncharacterized protein LOC105640215 [Jatropha curcas]
17 Hb_000012_450 0.1298867557 - - PREDICTED: uncharacterized protein LOC105638155 [Jatropha curcas]
18 Hb_011310_060 0.1314447481 - - PREDICTED: uncharacterized protein At2g34160-like [Jatropha curcas]
19 Hb_001804_040 0.1318867563 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000634_050 0.1332164645 - - PREDICTED: uncharacterized protein LOC105636623 [Jatropha curcas]

Gene co-expression network

sample Hb_007441_180 Hb_007441_180 Hb_001621_180 Hb_001621_180 Hb_007441_180--Hb_001621_180 Hb_001104_120 Hb_001104_120 Hb_007441_180--Hb_001104_120 Hb_000563_590 Hb_000563_590 Hb_007441_180--Hb_000563_590 Hb_009252_130 Hb_009252_130 Hb_007441_180--Hb_009252_130 Hb_000190_060 Hb_000190_060 Hb_007441_180--Hb_000190_060 Hb_002234_210 Hb_002234_210 Hb_007441_180--Hb_002234_210 Hb_001252_140 Hb_001252_140 Hb_001621_180--Hb_001252_140 Hb_001621_180--Hb_000563_590 Hb_001621_180--Hb_009252_130 Hb_005615_070 Hb_005615_070 Hb_001621_180--Hb_005615_070 Hb_001621_180--Hb_001104_120 Hb_001104_120--Hb_000563_590 Hb_000061_160 Hb_000061_160 Hb_001104_120--Hb_000061_160 Hb_001804_040 Hb_001804_040 Hb_001104_120--Hb_001804_040 Hb_001454_330 Hb_001454_330 Hb_001104_120--Hb_001454_330 Hb_000563_590--Hb_001454_330 Hb_000089_130 Hb_000089_130 Hb_000563_590--Hb_000089_130 Hb_011139_020 Hb_011139_020 Hb_000563_590--Hb_011139_020 Hb_183963_020 Hb_183963_020 Hb_000563_590--Hb_183963_020 Hb_009252_130--Hb_000190_060 Hb_000815_270 Hb_000815_270 Hb_009252_130--Hb_000815_270 Hb_001616_020 Hb_001616_020 Hb_009252_130--Hb_001616_020 Hb_009252_130--Hb_000563_590 Hb_000061_480 Hb_000061_480 Hb_009252_130--Hb_000061_480 Hb_001214_030 Hb_001214_030 Hb_000190_060--Hb_001214_030 Hb_000417_110 Hb_000417_110 Hb_000190_060--Hb_000417_110 Hb_000483_160 Hb_000483_160 Hb_000190_060--Hb_000483_160 Hb_000025_530 Hb_000025_530 Hb_000190_060--Hb_000025_530 Hb_003058_070 Hb_003058_070 Hb_000190_060--Hb_003058_070 Hb_004958_050 Hb_004958_050 Hb_002234_210--Hb_004958_050 Hb_000634_050 Hb_000634_050 Hb_002234_210--Hb_000634_050 Hb_002234_210--Hb_003058_070 Hb_002234_210--Hb_000417_110 Hb_002234_210--Hb_000190_060 Hb_002234_210--Hb_009252_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.5429 2.52551 6.13192 2.21335 58.4243 48.9999
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
85.5684 129.488 36.6189 13.4715 8.06514

CAGE analysis