Hb_007441_190

Information

Type -
Description -
Location Contig7441: 115635-118741
Sequence    

Annotation

kegg
ID cic:CICLE_v10021491mg
description hypothetical protein
nr
ID KDO85441.1
description hypothetical protein CISIN_1g023046mg [Citrus sinensis]
swissprot
ID O80507
description Putative casein kinase II subunit beta-4 OS=Arabidopsis thaliana GN=At2g44680 PE=2 SV=1
trembl
ID A0A067HCE1
description Casein kinase II subunit beta OS=Citrus sinensis GN=CISIN_1g023046mg PE=3 SV=1
Gene Ontology
ID GO:0005956
description casein kinase ii subunit beta-4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56623: 111982-115513 , PASA_asmbl_56624: 115701-118717 , PASA_asmbl_56625: 117136-117386
cDNA
(Sanger)
(ID:Location)		 025_F12r.ab1: 114417-115176

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007441_190 0.0 - - hypothetical protein CISIN_1g023046mg [Citrus sinensis]
2 Hb_002863_050 0.0753415263 - - aldose 1-epimerase, putative [Ricinus communis]
3 Hb_000580_180 0.0756255571 - - conserved hypothetical protein [Ricinus communis]
4 Hb_172632_120 0.0783193864 - - conserved hypothetical protein [Ricinus communis]
5 Hb_011344_210 0.0784292241 - - PREDICTED: probable calcium-binding protein CML13 [Jatropha curcas]
6 Hb_000948_230 0.0802686427 - - WD-repeat protein, putative [Ricinus communis]
7 Hb_156635_010 0.0818026523 - - PREDICTED: autophagy-related protein 8f [Jatropha curcas]
8 Hb_000300_500 0.0838885546 - - PREDICTED: uncharacterized protein LOC105632604 [Jatropha curcas]
9 Hb_002740_030 0.0839232859 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
10 Hb_024439_010 0.08540548 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
11 Hb_006455_120 0.0862525797 - - n6-DNA-methyltransferase, putative [Ricinus communis]
12 Hb_000453_160 0.0866729932 - - vacuolar protein sorting 26, vps26, putative [Ricinus communis]
13 Hb_001142_030 0.0867038771 - - PREDICTED: uncharacterized protein LOC105640023 [Jatropha curcas]
14 Hb_001633_130 0.0871941395 - - PREDICTED: uncharacterized protein LOC105630200 [Jatropha curcas]
15 Hb_003750_050 0.0873567645 - - PREDICTED: THO complex subunit 4D isoform X1 [Jatropha curcas]
16 Hb_000025_180 0.0878846011 - - hypothetical protein CISIN_1g024241mg [Citrus sinensis]
17 Hb_014720_120 0.0885395973 - - Phosphoenolpyruvate/phosphate translocator 1, chloroplastic -like protein [Gossypium arboreum]
18 Hb_000220_010 0.0896043505 - - PREDICTED: uncharacterized protein LOC105630083 [Jatropha curcas]
19 Hb_000025_630 0.0919944788 - - PREDICTED: uncharacterized protein LOC105635952 [Jatropha curcas]
20 Hb_082821_010 0.0921171391 - - PREDICTED: dephospho-CoA kinase-like [Jatropha curcas]

Gene co-expression network

sample Hb_007441_190 Hb_007441_190 Hb_002863_050 Hb_002863_050 Hb_007441_190--Hb_002863_050 Hb_000580_180 Hb_000580_180 Hb_007441_190--Hb_000580_180 Hb_172632_120 Hb_172632_120 Hb_007441_190--Hb_172632_120 Hb_011344_210 Hb_011344_210 Hb_007441_190--Hb_011344_210 Hb_000948_230 Hb_000948_230 Hb_007441_190--Hb_000948_230 Hb_156635_010 Hb_156635_010 Hb_007441_190--Hb_156635_010 Hb_005496_140 Hb_005496_140 Hb_002863_050--Hb_005496_140 Hb_002863_050--Hb_000580_180 Hb_005144_160 Hb_005144_160 Hb_002863_050--Hb_005144_160 Hb_001142_030 Hb_001142_030 Hb_002863_050--Hb_001142_030 Hb_003416_010 Hb_003416_010 Hb_002863_050--Hb_003416_010 Hb_000416_040 Hb_000416_040 Hb_002863_050--Hb_000416_040 Hb_000580_180--Hb_005144_160 Hb_000580_180--Hb_011344_210 Hb_000580_180--Hb_001142_030 Hb_000120_670 Hb_000120_670 Hb_000580_180--Hb_000120_670 Hb_007691_030 Hb_007691_030 Hb_000580_180--Hb_007691_030 Hb_000025_180 Hb_000025_180 Hb_172632_120--Hb_000025_180 Hb_000025_630 Hb_000025_630 Hb_172632_120--Hb_000025_630 Hb_001408_040 Hb_001408_040 Hb_172632_120--Hb_001408_040 Hb_000603_150 Hb_000603_150 Hb_172632_120--Hb_000603_150 Hb_001959_110 Hb_001959_110 Hb_172632_120--Hb_001959_110 Hb_172632_120--Hb_001142_030 Hb_001009_270 Hb_001009_270 Hb_011344_210--Hb_001009_270 Hb_032208_090 Hb_032208_090 Hb_011344_210--Hb_032208_090 Hb_000815_320 Hb_000815_320 Hb_011344_210--Hb_000815_320 Hb_005846_040 Hb_005846_040 Hb_011344_210--Hb_005846_040 Hb_003126_050 Hb_003126_050 Hb_011344_210--Hb_003126_050 Hb_003994_230 Hb_003994_230 Hb_000948_230--Hb_003994_230 Hb_013575_010 Hb_013575_010 Hb_000948_230--Hb_013575_010 Hb_003057_060 Hb_003057_060 Hb_000948_230--Hb_003057_060 Hb_004990_010 Hb_004990_010 Hb_000948_230--Hb_004990_010 Hb_000720_040 Hb_000720_040 Hb_000948_230--Hb_000720_040 Hb_001511_060 Hb_001511_060 Hb_000948_230--Hb_001511_060 Hb_007451_010 Hb_007451_010 Hb_156635_010--Hb_007451_010 Hb_000220_010 Hb_000220_010 Hb_156635_010--Hb_000220_010 Hb_014720_120 Hb_014720_120 Hb_156635_010--Hb_014720_120 Hb_002740_030 Hb_002740_030 Hb_156635_010--Hb_002740_030 Hb_003389_040 Hb_003389_040 Hb_156635_010--Hb_003389_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.2117 19.9125 23.4288 36.0494 24.9235 32.0765
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.6623 38.6153 29.6548 17.4451 12.7651

CAGE analysis