Hb_007441_200

Information

Type -
Description -
Location Contig7441: 121252-126785
Sequence    

Annotation

kegg
ID cit:102618644
description hypothetical protein
nr
ID XP_012083737.1
description PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]
swissprot
ID Q8RY89
description Phosphatidylinositol 4-phosphate 5-kinase 8 OS=Arabidopsis thaliana GN=PIP5K8 PE=1 SV=1
trembl
ID A0A067JY43
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14662 PE=4 SV=1
Gene Ontology
ID GO:0008168
description phosphatidylinositol-4-phosphate 5-kinase 8 -like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56626: 123132-123331 , PASA_asmbl_56627: 121732-126873
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007441_200 0.0 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]
2 Hb_003106_060 0.0608763771 - - hypothetical protein POPTR_0015s08140g [Populus trichocarpa]
3 Hb_005618_170 0.0683348011 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
4 Hb_005305_080 0.06881868 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
5 Hb_000571_120 0.0690840654 - - importin beta-1, putative [Ricinus communis]
6 Hb_018838_030 0.0720958802 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000805_020 0.0765915536 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
8 Hb_002016_110 0.0792501198 - - transducin family protein [Populus trichocarpa]
9 Hb_000876_070 0.0797337748 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
10 Hb_000085_050 0.0809310211 - - PREDICTED: grpE protein homolog, mitochondrial isoform X1 [Jatropha curcas]
11 Hb_000329_470 0.0822292738 - - ccr4-not transcription complex, putative [Ricinus communis]
12 Hb_003050_220 0.0824124739 - - hypothetical protein JCGZ_04601 [Jatropha curcas]
13 Hb_003464_060 0.0833233935 - - PREDICTED: F-box protein PP2-A15 [Jatropha curcas]
14 Hb_017224_030 0.0836134791 - - PREDICTED: A-agglutinin anchorage subunit [Jatropha curcas]
15 Hb_002026_180 0.0838154481 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
16 Hb_007441_230 0.0839045212 - - PREDICTED: probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase [Jatropha curcas]
17 Hb_001242_060 0.0839622397 - - PREDICTED: uncharacterized protein LOC105139508 [Populus euphratica]
18 Hb_032202_190 0.0840159039 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 21 [Gossypium raimondii]
19 Hb_004254_120 0.0844020857 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002137_020 0.0845543564 - - ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_007441_200 Hb_007441_200 Hb_003106_060 Hb_003106_060 Hb_007441_200--Hb_003106_060 Hb_005618_170 Hb_005618_170 Hb_007441_200--Hb_005618_170 Hb_005305_080 Hb_005305_080 Hb_007441_200--Hb_005305_080 Hb_000571_120 Hb_000571_120 Hb_007441_200--Hb_000571_120 Hb_018838_030 Hb_018838_030 Hb_007441_200--Hb_018838_030 Hb_000805_020 Hb_000805_020 Hb_007441_200--Hb_000805_020 Hb_003226_180 Hb_003226_180 Hb_003106_060--Hb_003226_180 Hb_000227_120 Hb_000227_120 Hb_003106_060--Hb_000227_120 Hb_003142_020 Hb_003142_020 Hb_003106_060--Hb_003142_020 Hb_003464_060 Hb_003464_060 Hb_003106_060--Hb_003464_060 Hb_000329_470 Hb_000329_470 Hb_003106_060--Hb_000329_470 Hb_005618_170--Hb_005305_080 Hb_004254_120 Hb_004254_120 Hb_005618_170--Hb_004254_120 Hb_000876_070 Hb_000876_070 Hb_005618_170--Hb_000876_070 Hb_032202_190 Hb_032202_190 Hb_005618_170--Hb_032202_190 Hb_007416_320 Hb_007416_320 Hb_005618_170--Hb_007416_320 Hb_000085_050 Hb_000085_050 Hb_005618_170--Hb_000085_050 Hb_010504_020 Hb_010504_020 Hb_005305_080--Hb_010504_020 Hb_000510_130 Hb_000510_130 Hb_005305_080--Hb_000510_130 Hb_005305_080--Hb_004254_120 Hb_005305_080--Hb_032202_190 Hb_005305_080--Hb_000876_070 Hb_002026_180 Hb_002026_180 Hb_000571_120--Hb_002026_180 Hb_002137_020 Hb_002137_020 Hb_000571_120--Hb_002137_020 Hb_000953_020 Hb_000953_020 Hb_000571_120--Hb_000953_020 Hb_000768_040 Hb_000768_040 Hb_000571_120--Hb_000768_040 Hb_000571_120--Hb_000805_020 Hb_000210_180 Hb_000210_180 Hb_018838_030--Hb_000210_180 Hb_015292_030 Hb_015292_030 Hb_018838_030--Hb_015292_030 Hb_000032_290 Hb_000032_290 Hb_018838_030--Hb_000032_290 Hb_018838_030--Hb_000085_050 Hb_063090_010 Hb_063090_010 Hb_018838_030--Hb_063090_010 Hb_004907_110 Hb_004907_110 Hb_000805_020--Hb_004907_110 Hb_000805_020--Hb_002026_180 Hb_007441_230 Hb_007441_230 Hb_000805_020--Hb_007441_230 Hb_000805_020--Hb_007416_320 Hb_010883_090 Hb_010883_090 Hb_000805_020--Hb_010883_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.0328 18.6898 7.15982 11.5041 16.6063 25.5178
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.4883 29.8991 26.1366 19.3429 15.8757

CAGE analysis