Hb_007441_220

Information

Type -
Description -
Location Contig7441: 130743-140323
Sequence    

Annotation

kegg
ID pop:POPTR_0002s14110g
description POPTRDRAFT_644266; hypothetical protein
nr
ID XP_012083742.1
description PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
swissprot
ID B9FXV5
description Eukaryotic translation initiation factor 4G OS=Oryza sativa subsp. japonica GN=Os07g0555200 PE=2 SV=2
trembl
ID A0A067KAP9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14665 PE=4 SV=1
Gene Ontology
ID GO:0003723
description eukaryotic translation initiation factor 4g

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56630: 130771-140324
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007441_220 0.0 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
2 Hb_000041_100 0.0590152488 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
3 Hb_002316_150 0.0656860392 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
4 Hb_001085_060 0.0658502712 - - PREDICTED: pentatricopeptide repeat-containing protein At1g04840 [Jatropha curcas]
5 Hb_000270_670 0.066551999 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
6 Hb_001999_090 0.0718028514 - - PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic [Jatropha curcas]
7 Hb_000245_040 0.0737727095 - - PREDICTED: uncharacterized protein LOC105631550 isoform X2 [Jatropha curcas]
8 Hb_002235_040 0.0772746746 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230 [Jatropha curcas]
9 Hb_000866_170 0.0788680152 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_002942_100 0.0791710192 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Jatropha curcas]
11 Hb_006718_020 0.0792994035 - - PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]
12 Hb_004143_130 0.080126064 - - PREDICTED: BEACH domain-containing protein lvsC [Jatropha curcas]
13 Hb_003371_090 0.080566806 - - PREDICTED: uncharacterized protein LOC105650336 [Jatropha curcas]
14 Hb_000603_110 0.0807016024 - - copper transporter, putative [Ricinus communis]
15 Hb_000107_420 0.0849937228 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial [Jatropha curcas]
16 Hb_002316_160 0.0862281977 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640422 [Jatropha curcas]
17 Hb_004724_150 0.0885157626 - - expressed protein, putative [Ricinus communis]
18 Hb_000107_490 0.0888700851 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
19 Hb_000297_010 0.0889280214 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
20 Hb_000964_130 0.0900728408 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 30-like [Jatropha curcas]

Gene co-expression network

sample Hb_007441_220 Hb_007441_220 Hb_000041_100 Hb_000041_100 Hb_007441_220--Hb_000041_100 Hb_002316_150 Hb_002316_150 Hb_007441_220--Hb_002316_150 Hb_001085_060 Hb_001085_060 Hb_007441_220--Hb_001085_060 Hb_000270_670 Hb_000270_670 Hb_007441_220--Hb_000270_670 Hb_001999_090 Hb_001999_090 Hb_007441_220--Hb_001999_090 Hb_000245_040 Hb_000245_040 Hb_007441_220--Hb_000245_040 Hb_003371_090 Hb_003371_090 Hb_000041_100--Hb_003371_090 Hb_002450_020 Hb_002450_020 Hb_000041_100--Hb_002450_020 Hb_000297_010 Hb_000297_010 Hb_000041_100--Hb_000297_010 Hb_000230_500 Hb_000230_500 Hb_000041_100--Hb_000230_500 Hb_011386_010 Hb_011386_010 Hb_000041_100--Hb_011386_010 Hb_006718_020 Hb_006718_020 Hb_002316_150--Hb_006718_020 Hb_002316_150--Hb_000270_670 Hb_000866_120 Hb_000866_120 Hb_002316_150--Hb_000866_120 Hb_000172_110 Hb_000172_110 Hb_002316_150--Hb_000172_110 Hb_000140_230 Hb_000140_230 Hb_002316_150--Hb_000140_230 Hb_001085_060--Hb_000041_100 Hb_002942_100 Hb_002942_100 Hb_001085_060--Hb_002942_100 Hb_000107_420 Hb_000107_420 Hb_001085_060--Hb_000107_420 Hb_000603_110 Hb_000603_110 Hb_001085_060--Hb_000603_110 Hb_001085_060--Hb_002316_150 Hb_000270_670--Hb_000172_110 Hb_000270_670--Hb_000866_120 Hb_000890_050 Hb_000890_050 Hb_000270_670--Hb_000890_050 Hb_004143_130 Hb_004143_130 Hb_000270_670--Hb_004143_130 Hb_002235_040 Hb_002235_040 Hb_001999_090--Hb_002235_040 Hb_004712_130 Hb_004712_130 Hb_001999_090--Hb_004712_130 Hb_001999_090--Hb_006718_020 Hb_002316_160 Hb_002316_160 Hb_001999_090--Hb_002316_160 Hb_027472_070 Hb_027472_070 Hb_001999_090--Hb_027472_070 Hb_000107_490 Hb_000107_490 Hb_000245_040--Hb_000107_490 Hb_000245_040--Hb_000297_010 Hb_000866_170 Hb_000866_170 Hb_000245_040--Hb_000866_170 Hb_004724_150 Hb_004724_150 Hb_000245_040--Hb_004724_150 Hb_006938_080 Hb_006938_080 Hb_000245_040--Hb_006938_080 Hb_000890_210 Hb_000890_210 Hb_000245_040--Hb_000890_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.056 38.6355 10.1607 22.4425 21.8206 30.161
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.4882 30.1522 48.9746 30.9975 33.7821

CAGE analysis