Hb_007441_260

Information

Type -
Description -
Location Contig7441: 178556-182193
Sequence    

Annotation

kegg
ID tcc:TCM_005791
description ATPase, F1 complex, delta/epsilon subunit
nr
ID XP_012083750.1
description PREDICTED: ATP synthase subunit delta', mitochondrial-like [Jatropha curcas]
swissprot
ID Q40089
description ATP synthase subunit delta', mitochondrial OS=Ipomoea batatas PE=1 SV=1
trembl
ID A0A067KAQ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14670 PE=3 SV=1
Gene Ontology
ID GO:0045261
description atp synthase subunit delta mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56638: 178355-181557
cDNA
(Sanger)
(ID:Location)		 026_L02r.ab1: 182119-184589

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007441_260 0.0 - - PREDICTED: ATP synthase subunit delta', mitochondrial-like [Jatropha curcas]
2 Hb_000384_120 0.0894363951 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
3 Hb_005391_030 0.0935603001 - - putative cytidine/deoxycytidylate deaminase family protein [Zea mays]
4 Hb_000087_130 0.0985160574 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Jatropha curcas]
5 Hb_007192_100 0.1008322263 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 6-like [Jatropha curcas]
6 Hb_003880_030 0.1063037189 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
7 Hb_000417_260 0.1074008859 - - protein with unknown function [Ricinus communis]
8 Hb_005278_040 0.1083877785 - - PREDICTED: sorcin-like isoform X1 [Populus euphratica]
9 Hb_001005_080 0.1083946578 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
10 Hb_000356_090 0.108461411 - - PREDICTED: uncharacterized protein At2g38710 [Jatropha curcas]
11 Hb_009075_010 0.1089264838 - - 60S ribosomal protein L10B [Hevea brasiliensis]
12 Hb_000115_230 0.1098909176 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
13 Hb_000030_200 0.1111480587 - - PREDICTED: early nodulin-93-like [Populus euphratica]
14 Hb_003020_330 0.1114887181 - - hypothetical protein B456_010G173100 [Gossypium raimondii]
15 Hb_001314_040 0.1121877987 - - hypothetical protein POPTR_0011s10470g [Populus trichocarpa]
16 Hb_001172_120 0.1128619328 - - hypothetical protein B456_012G082000 [Gossypium raimondii]
17 Hb_072922_020 0.1130282401 - - SNARE-like superfamily protein [Theobroma cacao]
18 Hb_147752_010 0.1137897599 - - PREDICTED: 40S ribosomal protein S9-2-like isoform X1 [Populus euphratica]
19 Hb_005054_260 0.1139713151 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A [Jatropha curcas]
20 Hb_001240_020 0.1158791223 - - PREDICTED: uncharacterized protein LOC105641171 [Jatropha curcas]

Gene co-expression network

sample Hb_007441_260 Hb_007441_260 Hb_000384_120 Hb_000384_120 Hb_007441_260--Hb_000384_120 Hb_005391_030 Hb_005391_030 Hb_007441_260--Hb_005391_030 Hb_000087_130 Hb_000087_130 Hb_007441_260--Hb_000087_130 Hb_007192_100 Hb_007192_100 Hb_007441_260--Hb_007192_100 Hb_003880_030 Hb_003880_030 Hb_007441_260--Hb_003880_030 Hb_000417_260 Hb_000417_260 Hb_007441_260--Hb_000417_260 Hb_072922_020 Hb_072922_020 Hb_000384_120--Hb_072922_020 Hb_000384_120--Hb_000417_260 Hb_000384_120--Hb_003880_030 Hb_000922_040 Hb_000922_040 Hb_000384_120--Hb_000922_040 Hb_005269_080 Hb_005269_080 Hb_000384_120--Hb_005269_080 Hb_002324_010 Hb_002324_010 Hb_000384_120--Hb_002324_010 Hb_000193_120 Hb_000193_120 Hb_005391_030--Hb_000193_120 Hb_000356_090 Hb_000356_090 Hb_005391_030--Hb_000356_090 Hb_000103_010 Hb_000103_010 Hb_005391_030--Hb_000103_010 Hb_001085_270 Hb_001085_270 Hb_005391_030--Hb_001085_270 Hb_180074_010 Hb_180074_010 Hb_005391_030--Hb_180074_010 Hb_001155_040 Hb_001155_040 Hb_000087_130--Hb_001155_040 Hb_000087_130--Hb_072922_020 Hb_006915_040 Hb_006915_040 Hb_000087_130--Hb_006915_040 Hb_000948_220 Hb_000948_220 Hb_000087_130--Hb_000948_220 Hb_000030_200 Hb_000030_200 Hb_000087_130--Hb_000030_200 Hb_000087_130--Hb_000384_120 Hb_001172_120 Hb_001172_120 Hb_007192_100--Hb_001172_120 Hb_001005_080 Hb_001005_080 Hb_007192_100--Hb_001005_080 Hb_015807_100 Hb_015807_100 Hb_007192_100--Hb_015807_100 Hb_000115_230 Hb_000115_230 Hb_007192_100--Hb_000115_230 Hb_152910_020 Hb_152910_020 Hb_007192_100--Hb_152910_020 Hb_007192_100--Hb_000384_120 Hb_000673_020 Hb_000673_020 Hb_003880_030--Hb_000673_020 Hb_003880_030--Hb_072922_020 Hb_001979_020 Hb_001979_020 Hb_003880_030--Hb_001979_020 Hb_001329_150 Hb_001329_150 Hb_003880_030--Hb_001329_150 Hb_003880_030--Hb_000922_040 Hb_005278_040 Hb_005278_040 Hb_000417_260--Hb_005278_040 Hb_000417_260--Hb_001005_080 Hb_004672_010 Hb_004672_010 Hb_000417_260--Hb_004672_010 Hb_001008_090 Hb_001008_090 Hb_000417_260--Hb_001008_090 Hb_001481_140 Hb_001481_140 Hb_000417_260--Hb_001481_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.69548 7.3171 17.1656 24.0146 5.88625 5.57134
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.7581 69.7358 38.2523 22.7489 11.2029

CAGE analysis