Hb_007441_270

Information

Type -
Description -
Location Contig7441: 181666-184375
Sequence    

Annotation

kegg
ID cic:CICLE_v10009763mg
description hypothetical protein
nr
ID XP_012083751.1
description PREDICTED: 40S ribosomal protein S11 [Jatropha curcas]
swissprot
ID Q9M5M1
description 40S ribosomal protein S11 OS=Euphorbia esula GN=RPS11 PE=2 SV=1
trembl
ID A0A067F362
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031480mg PE=3 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s11-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56639: 181805-184661
cDNA
(Sanger)
(ID:Location)		 026_L02.ab1: 181808-184497 , 052_D06.ab1: 181805-184558

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007441_270 0.0 - - PREDICTED: 40S ribosomal protein S11 [Jatropha curcas]
2 Hb_000003_730 0.0767003267 - - DNA repair/transcription protein met18/mms19, putative [Ricinus communis]
3 Hb_000684_230 0.099063606 - - 40S ribosomal protein S23, putative [Ricinus communis]
4 Hb_067776_010 0.1027583748 - - mitochondrial 39S ribosomal protein L53 [Hevea brasiliensis]
5 Hb_001269_320 0.1045988941 - - 40S ribosomal protein S12A [Hevea brasiliensis]
6 Hb_004502_020 0.1081835747 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
7 Hb_000500_060 0.1087380035 - - BnaC08g21190D [Brassica napus]
8 Hb_031042_010 0.1096369947 - - hypothetical protein JCGZ_03409 [Jatropha curcas]
9 Hb_000771_100 0.1119010905 - - Os06g0527300 [Oryza sativa Japonica Group]
10 Hb_004007_100 0.1128343991 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
11 Hb_002296_040 0.113443959 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
12 Hb_086703_010 0.1140485901 - - PREDICTED: F-box protein At5g52880 [Jatropha curcas]
13 Hb_093666_020 0.1142454351 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
14 Hb_003687_020 0.1177909719 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
15 Hb_009554_010 0.118263175 - - PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Jatropha curcas]
16 Hb_002701_050 0.1206347501 - - PREDICTED: 60S ribosomal protein L7a-like [Jatropha curcas]
17 Hb_007317_060 0.1207933728 - - 60S ribosomal protein L10aB [Hevea brasiliensis]
18 Hb_005400_030 0.1230290193 - - PREDICTED: LYR motif-containing protein At3g19508 [Jatropha curcas]
19 Hb_004223_220 0.1234530548 - - PREDICTED: uncharacterized protein LOC105635366 isoform X1 [Jatropha curcas]
20 Hb_031089_040 0.1259472312 - - thioredoxin H-type 1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_007441_270 Hb_007441_270 Hb_000003_730 Hb_000003_730 Hb_007441_270--Hb_000003_730 Hb_000684_230 Hb_000684_230 Hb_007441_270--Hb_000684_230 Hb_067776_010 Hb_067776_010 Hb_007441_270--Hb_067776_010 Hb_001269_320 Hb_001269_320 Hb_007441_270--Hb_001269_320 Hb_004502_020 Hb_004502_020 Hb_007441_270--Hb_004502_020 Hb_000500_060 Hb_000500_060 Hb_007441_270--Hb_000500_060 Hb_004032_100 Hb_004032_100 Hb_000003_730--Hb_004032_100 Hb_031089_040 Hb_031089_040 Hb_000003_730--Hb_031089_040 Hb_000003_730--Hb_000684_230 Hb_002296_040 Hb_002296_040 Hb_000003_730--Hb_002296_040 Hb_000003_730--Hb_004502_020 Hb_008173_120 Hb_008173_120 Hb_000684_230--Hb_008173_120 Hb_007193_100 Hb_007193_100 Hb_000684_230--Hb_007193_100 Hb_000024_080 Hb_000024_080 Hb_000684_230--Hb_000024_080 Hb_007317_060 Hb_007317_060 Hb_000684_230--Hb_007317_060 Hb_000103_140 Hb_000103_140 Hb_000684_230--Hb_000103_140 Hb_000812_040 Hb_000812_040 Hb_067776_010--Hb_000812_040 Hb_032927_010 Hb_032927_010 Hb_067776_010--Hb_032927_010 Hb_000648_030 Hb_000648_030 Hb_067776_010--Hb_000648_030 Hb_012675_070 Hb_012675_070 Hb_067776_010--Hb_012675_070 Hb_067776_010--Hb_000003_730 Hb_003266_050 Hb_003266_050 Hb_001269_320--Hb_003266_050 Hb_007229_070 Hb_007229_070 Hb_001269_320--Hb_007229_070 Hb_004440_050 Hb_004440_050 Hb_001269_320--Hb_004440_050 Hb_001369_660 Hb_001369_660 Hb_001269_320--Hb_001369_660 Hb_003011_040 Hb_003011_040 Hb_001269_320--Hb_003011_040 Hb_001279_070 Hb_001279_070 Hb_001269_320--Hb_001279_070 Hb_000505_140 Hb_000505_140 Hb_004502_020--Hb_000505_140 Hb_004502_020--Hb_031089_040 Hb_000155_180 Hb_000155_180 Hb_004502_020--Hb_000155_180 Hb_002207_110 Hb_002207_110 Hb_004502_020--Hb_002207_110 Hb_032202_090 Hb_032202_090 Hb_004502_020--Hb_032202_090 Hb_031042_010 Hb_031042_010 Hb_000500_060--Hb_031042_010 Hb_000196_050 Hb_000196_050 Hb_000500_060--Hb_000196_050 Hb_002701_050 Hb_002701_050 Hb_000500_060--Hb_002701_050 Hb_000108_140 Hb_000108_140 Hb_000500_060--Hb_000108_140 Hb_000199_070 Hb_000199_070 Hb_000500_060--Hb_000199_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
189.579 89.7731 91.6987 322.534 206.731 690.132
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
375.623 736.821 213.027 196.805 47.2937

CAGE analysis