Hb_007441_280

Information

Type -
Description -
Location Contig7441: 186531-190195
Sequence    

Annotation

kegg
ID rcu:RCOM_0658760
description ring finger protein, putative
nr
ID KDP28901.1
description hypothetical protein JCGZ_14672 [Jatropha curcas]
swissprot
ID Q7T037
description E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b PE=2 SV=1
trembl
ID A0A067JY53
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14672 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ring finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56640: 186671-190189
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007441_280 0.0 - - hypothetical protein JCGZ_14672 [Jatropha curcas]
2 Hb_000144_120 0.0712744876 - - WD-repeat protein, putative [Ricinus communis]
3 Hb_001221_020 0.0920402066 - - PREDICTED: probable aspartyl aminopeptidase [Jatropha curcas]
4 Hb_001900_100 0.0953129173 - - PREDICTED: uncharacterized protein LOC105632664 isoform X1 [Jatropha curcas]
5 Hb_000159_120 0.0971597039 - - PREDICTED: uncharacterized protein LOC105632857 [Jatropha curcas]
6 Hb_005081_020 0.0988042088 - - PREDICTED: ninja-family protein mc410 [Jatropha curcas]
7 Hb_000327_250 0.0999139106 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
8 Hb_107298_010 0.1052078635 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
9 Hb_016347_010 0.1073713523 - - protein transporter, putative [Ricinus communis]
10 Hb_008226_070 0.10741454 - - PREDICTED: expansin-A8 [Jatropha curcas]
11 Hb_000209_100 0.1089951752 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X2 [Jatropha curcas]
12 Hb_003544_030 0.109119947 - - PREDICTED: citrate synthase, glyoxysomal [Jatropha curcas]
13 Hb_003906_170 0.1125347748 - - alcohol dehydrogenase, putative [Ricinus communis]
14 Hb_005305_050 0.1130685993 - - PREDICTED: armadillo repeat-containing protein 8 [Jatropha curcas]
15 Hb_003020_100 0.1141095946 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
16 Hb_001642_070 0.1143691698 - - PREDICTED: uncharacterized protein LOC105646431 [Jatropha curcas]
17 Hb_000535_050 0.1157166001 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Jatropha curcas]
18 Hb_001500_100 0.1168392288 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001104_100 0.117107032 - - RecName: Full=Enolase 2; AltName: Full=2-phospho-D-glycerate hydro-lyase 2; AltName: Full=2-phosphoglycerate dehydratase 2; AltName: Allergen=Hev b 9 [Hevea brasiliensis]
20 Hb_000580_120 0.1182225221 - - PREDICTED: transketolase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_007441_280 Hb_007441_280 Hb_000144_120 Hb_000144_120 Hb_007441_280--Hb_000144_120 Hb_001221_020 Hb_001221_020 Hb_007441_280--Hb_001221_020 Hb_001900_100 Hb_001900_100 Hb_007441_280--Hb_001900_100 Hb_000159_120 Hb_000159_120 Hb_007441_280--Hb_000159_120 Hb_005081_020 Hb_005081_020 Hb_007441_280--Hb_005081_020 Hb_000327_250 Hb_000327_250 Hb_007441_280--Hb_000327_250 Hb_012760_040 Hb_012760_040 Hb_000144_120--Hb_012760_040 Hb_001004_140 Hb_001004_140 Hb_000144_120--Hb_001004_140 Hb_000144_120--Hb_000327_250 Hb_000144_120--Hb_001900_100 Hb_000144_120--Hb_001221_020 Hb_004880_150 Hb_004880_150 Hb_001221_020--Hb_004880_150 Hb_000841_050 Hb_000841_050 Hb_001221_020--Hb_000841_050 Hb_000025_190 Hb_000025_190 Hb_001221_020--Hb_000025_190 Hb_005648_010 Hb_005648_010 Hb_001221_020--Hb_005648_010 Hb_003776_060 Hb_003776_060 Hb_001221_020--Hb_003776_060 Hb_001493_150 Hb_001493_150 Hb_001221_020--Hb_001493_150 Hb_001811_170 Hb_001811_170 Hb_001900_100--Hb_001811_170 Hb_004837_280 Hb_004837_280 Hb_001900_100--Hb_004837_280 Hb_107298_010 Hb_107298_010 Hb_001900_100--Hb_107298_010 Hb_004450_070 Hb_004450_070 Hb_001900_100--Hb_004450_070 Hb_019280_010 Hb_019280_010 Hb_001900_100--Hb_019280_010 Hb_012022_080 Hb_012022_080 Hb_000159_120--Hb_012022_080 Hb_008226_070 Hb_008226_070 Hb_000159_120--Hb_008226_070 Hb_003906_170 Hb_003906_170 Hb_000159_120--Hb_003906_170 Hb_001019_050 Hb_001019_050 Hb_000159_120--Hb_001019_050 Hb_000159_120--Hb_001221_020 Hb_000159_120--Hb_107298_010 Hb_083799_010 Hb_083799_010 Hb_005081_020--Hb_083799_010 Hb_000692_160 Hb_000692_160 Hb_005081_020--Hb_000692_160 Hb_075315_010 Hb_075315_010 Hb_005081_020--Hb_075315_010 Hb_002391_210 Hb_002391_210 Hb_005081_020--Hb_002391_210 Hb_001269_140 Hb_001269_140 Hb_005081_020--Hb_001269_140 Hb_005081_020--Hb_003906_170 Hb_003544_030 Hb_003544_030 Hb_000327_250--Hb_003544_030 Hb_016347_010 Hb_016347_010 Hb_000327_250--Hb_016347_010 Hb_005663_110 Hb_005663_110 Hb_000327_250--Hb_005663_110 Hb_004096_110 Hb_004096_110 Hb_000327_250--Hb_004096_110 Hb_021576_010 Hb_021576_010 Hb_000327_250--Hb_021576_010 Hb_001434_080 Hb_001434_080 Hb_000327_250--Hb_001434_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.34096 11.4635 9.75885 18.5691 4.41589 8.63019
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8144 6.01887 10.7915 27.9565 10.3711

CAGE analysis