Hb_007441_290

Information

Type -
Description -
Location Contig7441: 191412-193482
Sequence    

Annotation

kegg
ID tcc:TCM_005795
description Ferredoxin-related
nr
ID XP_012083755.1
description PREDICTED: uncharacterized protein LOC105643262 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K1I4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14674 PE=4 SV=1
Gene Ontology
ID GO:0008233
description lon mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56642: 191408-193491 , PASA_asmbl_56643: 192591-192994
cDNA
(Sanger)
(ID:Location)		 044_C01.ab1: 191679-193491

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007441_290 0.0 - - PREDICTED: uncharacterized protein LOC105643262 [Jatropha curcas]
2 Hb_004650_040 0.0910223764 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105638892 [Jatropha curcas]
3 Hb_169753_010 0.0940671226 - - hypothetical protein JCGZ_18439 [Jatropha curcas]
4 Hb_002205_160 0.0960596063 - - chalcone isomerase [Hibiscus cannabinus]
5 Hb_012753_150 0.1115654423 transcription factor TF Family: GRAS DELLA protein RGL1, putative [Ricinus communis]
6 Hb_010267_020 0.1247651635 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
7 Hb_006519_020 0.1254858352 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
8 Hb_000142_030 0.1276263809 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
9 Hb_000388_040 0.1287454854 - - PREDICTED: probable calcium-binding protein CML23 [Jatropha curcas]
10 Hb_004459_030 0.1295734082 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
11 Hb_001761_010 0.1295928562 - - PREDICTED: uncharacterized protein LOC105639282 [Jatropha curcas]
12 Hb_000200_270 0.1307497383 - - PREDICTED: lipid phosphate phosphatase 1-like isoform X1 [Jatropha curcas]
13 Hb_022406_010 0.1309492401 - - UDP-glucosyltransferase, putative [Ricinus communis]
14 Hb_001143_200 0.1329224857 transcription factor TF Family: NAC NAC domain protein [Glycine max]
15 Hb_005649_050 0.1334991491 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005695_070 0.1364440308 - - Cysteine-rich RLK 29 [Theobroma cacao]
17 Hb_001040_050 0.1373478607 - - Stem-specific protein TSJT1, putative [Ricinus communis]
18 Hb_002918_220 0.1376497958 - - PREDICTED: uncharacterized protein LOC105138896 [Populus euphratica]
19 Hb_003935_050 0.1419902418 - - protein with unknown function [Ricinus communis]
20 Hb_002170_060 0.1428053104 - - PREDICTED: mitogen-activated protein kinase-binding protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_007441_290 Hb_007441_290 Hb_004650_040 Hb_004650_040 Hb_007441_290--Hb_004650_040 Hb_169753_010 Hb_169753_010 Hb_007441_290--Hb_169753_010 Hb_002205_160 Hb_002205_160 Hb_007441_290--Hb_002205_160 Hb_012753_150 Hb_012753_150 Hb_007441_290--Hb_012753_150 Hb_010267_020 Hb_010267_020 Hb_007441_290--Hb_010267_020 Hb_006519_020 Hb_006519_020 Hb_007441_290--Hb_006519_020 Hb_004650_040--Hb_002205_160 Hb_004650_040--Hb_169753_010 Hb_007632_200 Hb_007632_200 Hb_004650_040--Hb_007632_200 Hb_001143_200 Hb_001143_200 Hb_004650_040--Hb_001143_200 Hb_022406_010 Hb_022406_010 Hb_004650_040--Hb_022406_010 Hb_169753_010--Hb_002205_160 Hb_169753_010--Hb_010267_020 Hb_169753_010--Hb_006519_020 Hb_004007_080 Hb_004007_080 Hb_169753_010--Hb_004007_080 Hb_004422_030 Hb_004422_030 Hb_169753_010--Hb_004422_030 Hb_000035_150 Hb_000035_150 Hb_002205_160--Hb_000035_150 Hb_003992_130 Hb_003992_130 Hb_002205_160--Hb_003992_130 Hb_007951_020 Hb_007951_020 Hb_002205_160--Hb_007951_020 Hb_002205_160--Hb_022406_010 Hb_001761_010 Hb_001761_010 Hb_012753_150--Hb_001761_010 Hb_006060_010 Hb_006060_010 Hb_012753_150--Hb_006060_010 Hb_000388_040 Hb_000388_040 Hb_012753_150--Hb_000388_040 Hb_005568_140 Hb_005568_140 Hb_012753_150--Hb_005568_140 Hb_004109_100 Hb_004109_100 Hb_012753_150--Hb_004109_100 Hb_012753_150--Hb_010267_020 Hb_000200_270 Hb_000200_270 Hb_010267_020--Hb_000200_270 Hb_002918_220 Hb_002918_220 Hb_010267_020--Hb_002918_220 Hb_010267_020--Hb_005568_140 Hb_010267_020--Hb_004422_030 Hb_005695_070 Hb_005695_070 Hb_010267_020--Hb_005695_070 Hb_006519_020--Hb_022406_010 Hb_006519_020--Hb_004007_080 Hb_001606_040 Hb_001606_040 Hb_006519_020--Hb_001606_040 Hb_001040_050 Hb_001040_050 Hb_006519_020--Hb_001040_050 Hb_007681_020 Hb_007681_020 Hb_006519_020--Hb_007681_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.329227 6.16073 62.431 11.3767 0.188274 0.0196611
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.255609 0.0804138 0.295887 3.94592 2.95962

CAGE analysis