Hb_007441_300

Information

Type -
Description -
Location Contig7441: 197517-199194
Sequence    

Annotation

kegg
ID rcu:RCOM_0658800
description ATP binding protein, putative
nr
ID XP_002526500.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID A7I0W4
description 10 kDa chaperonin OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=groS PE=3 SV=1
trembl
ID B9SKH0
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0658800 PE=4 SV=1
Gene Ontology
ID GO:0005737
description 20 kda chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56644: 197641-199967 , PASA_asmbl_56646: 197684-198972
cDNA
(Sanger)
(ID:Location)		 010_D04.ab1: 197626-199956 , 010_E04.ab1: 197647-199967 , 019_M17.ab1: 197684-199956 , 032_I01.ab1: 197649-199923 , 042_F08.ab1: 197684-199954 , 044_B12.ab1: 197641-199954

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007441_300 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_000317_070 0.0699644403 - - PREDICTED: uncharacterized protein LOC103942205 isoform X2 [Pyrus x bretschneideri]
3 Hb_174865_010 0.0708335805 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
4 Hb_003018_020 0.0820370149 - - PREDICTED: uncharacterized protein LOC105628697 [Jatropha curcas]
5 Hb_004871_020 0.0823101566 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
6 Hb_004459_040 0.0835852962 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
7 Hb_000948_220 0.0858981748 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
8 Hb_000087_130 0.0870044306 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Jatropha curcas]
9 Hb_017491_060 0.0886340817 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
10 Hb_143496_010 0.0894682982 - - PREDICTED: 40S ribosomal protein S3-3 [Glycine max]
11 Hb_002000_140 0.0900088486 - - PREDICTED: thioredoxin Y2, chloroplastic [Jatropha curcas]
12 Hb_006915_040 0.0920566364 - - PREDICTED: prefoldin subunit 6 [Eucalyptus grandis]
13 Hb_001155_040 0.0922290483 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
14 Hb_004102_070 0.093892439 - - Cytochrome c oxidase subunit 5b-2, mitochondrial -like protein [Gossypium arboreum]
15 Hb_033153_060 0.0947886636 - - Transcription elongation factor, putative [Ricinus communis]
16 Hb_000676_160 0.0950520909 - - folate carrier protein, putative [Ricinus communis]
17 Hb_179296_010 0.095114656 - - hypothetical protein B456_006G094200 [Gossypium raimondii]
18 Hb_003226_100 0.0981760682 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]
19 Hb_153544_010 0.0984427123 - - PREDICTED: coiled-coil domain-containing protein 130-like [Populus euphratica]
20 Hb_000996_140 0.098644844 - - PREDICTED: EKC/KEOPS complex subunit Tprkb [Jatropha curcas]

Gene co-expression network

sample Hb_007441_300 Hb_007441_300 Hb_000317_070 Hb_000317_070 Hb_007441_300--Hb_000317_070 Hb_174865_010 Hb_174865_010 Hb_007441_300--Hb_174865_010 Hb_003018_020 Hb_003018_020 Hb_007441_300--Hb_003018_020 Hb_004871_020 Hb_004871_020 Hb_007441_300--Hb_004871_020 Hb_004459_040 Hb_004459_040 Hb_007441_300--Hb_004459_040 Hb_000948_220 Hb_000948_220 Hb_007441_300--Hb_000948_220 Hb_000317_070--Hb_004871_020 Hb_000317_070--Hb_174865_010 Hb_000735_040 Hb_000735_040 Hb_000317_070--Hb_000735_040 Hb_000093_110 Hb_000093_110 Hb_000317_070--Hb_000093_110 Hb_153544_010 Hb_153544_010 Hb_000317_070--Hb_153544_010 Hb_174865_010--Hb_000735_040 Hb_000676_160 Hb_000676_160 Hb_174865_010--Hb_000676_160 Hb_179296_010 Hb_179296_010 Hb_174865_010--Hb_179296_010 Hb_174865_010--Hb_003018_020 Hb_003226_100 Hb_003226_100 Hb_003018_020--Hb_003226_100 Hb_004157_030 Hb_004157_030 Hb_003018_020--Hb_004157_030 Hb_000506_070 Hb_000506_070 Hb_003018_020--Hb_000506_070 Hb_001141_140 Hb_001141_140 Hb_003018_020--Hb_001141_140 Hb_000836_470 Hb_000836_470 Hb_003018_020--Hb_000836_470 Hb_004871_020--Hb_153544_010 Hb_000525_020 Hb_000525_020 Hb_004871_020--Hb_000525_020 Hb_009711_020 Hb_009711_020 Hb_004871_020--Hb_009711_020 Hb_000030_290 Hb_000030_290 Hb_004871_020--Hb_000030_290 Hb_033153_060 Hb_033153_060 Hb_004459_040--Hb_033153_060 Hb_007576_170 Hb_007576_170 Hb_004459_040--Hb_007576_170 Hb_000680_140 Hb_000680_140 Hb_004459_040--Hb_000680_140 Hb_006541_010 Hb_006541_010 Hb_004459_040--Hb_006541_010 Hb_002687_170 Hb_002687_170 Hb_004459_040--Hb_002687_170 Hb_000224_140 Hb_000224_140 Hb_004459_040--Hb_000224_140 Hb_000087_130 Hb_000087_130 Hb_000948_220--Hb_000087_130 Hb_007120_090 Hb_007120_090 Hb_000948_220--Hb_007120_090 Hb_002838_030 Hb_002838_030 Hb_000948_220--Hb_002838_030 Hb_001155_040 Hb_001155_040 Hb_000948_220--Hb_001155_040 Hb_000948_220--Hb_000317_070 Hb_000948_220--Hb_174865_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.4047 21.0555 71.0046 85.4177 40.5735 55.5505
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
187.377 235.797 71.1297 52.9423 52.7195

CAGE analysis