Hb_007441_330

Information

Type -
Description -
Location Contig7441: 209870-212220
Sequence    

Annotation

kegg
ID cic:CICLE_v10022877mg
description hypothetical protein
nr
ID XP_012083759.1
description PREDICTED: acyl carrier protein 1, mitochondrial [Jatropha curcas]
swissprot
ID P53665
description Acyl carrier protein 1, mitochondrial OS=Arabidopsis thaliana GN=MTACP1 PE=2 SV=1
trembl
ID A0A0B2S5H9
description Acyl carrier protein OS=Glycine soja GN=glysoja_001003 PE=3 SV=1
Gene Ontology
ID GO:0006633
description acyl carrier protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56649: 209766-212265 , PASA_asmbl_56650: 209766-212265
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007441_330 0.0 - - PREDICTED: acyl carrier protein 1, mitochondrial [Jatropha curcas]
2 Hb_000996_140 0.0548373479 - - PREDICTED: EKC/KEOPS complex subunit Tprkb [Jatropha curcas]
3 Hb_026053_020 0.0713159128 - - PREDICTED: uncharacterized protein LOC105643718 [Jatropha curcas]
4 Hb_010175_040 0.0725260162 - - PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Jatropha curcas]
5 Hb_000826_100 0.07253177 - - PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Jatropha curcas]
6 Hb_000103_320 0.0748630384 - - Stem-specific protein TSJT1, putative [Ricinus communis]
7 Hb_008071_020 0.0781386425 - - PREDICTED: serine/threonine-protein kinase AFC1 [Jatropha curcas]
8 Hb_002843_140 0.0783284217 - - hypothetical protein JCGZ_20933 [Jatropha curcas]
9 Hb_001341_090 0.0798695586 - - PREDICTED: adenylate kinase isoenzyme 6 homolog [Jatropha curcas]
10 Hb_002343_060 0.0808329892 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
11 Hb_118419_010 0.0809520221 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
12 Hb_000201_120 0.0811971425 - - ubiquitin-protein ligase 2a [Hevea brasiliensis]
13 Hb_000840_180 0.084081288 - - protein BOLA2 [Jatropha curcas]
14 Hb_001604_060 0.0855021594 - - PREDICTED: TPR repeat-containing thioredoxin TTL1 [Jatropha curcas]
15 Hb_018133_020 0.0864135454 - - transporter, putative [Ricinus communis]
16 Hb_000261_160 0.0880971662 - - PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X2 [Jatropha curcas]
17 Hb_001484_070 0.0892502262 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000189_240 0.089619649 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
19 Hb_000261_140 0.0896651232 - - -
20 Hb_003581_150 0.0908674851 - - hypothetical protein CICLE_v10032366mg [Citrus clementina]

Gene co-expression network

sample Hb_007441_330 Hb_007441_330 Hb_000996_140 Hb_000996_140 Hb_007441_330--Hb_000996_140 Hb_026053_020 Hb_026053_020 Hb_007441_330--Hb_026053_020 Hb_010175_040 Hb_010175_040 Hb_007441_330--Hb_010175_040 Hb_000826_100 Hb_000826_100 Hb_007441_330--Hb_000826_100 Hb_000103_320 Hb_000103_320 Hb_007441_330--Hb_000103_320 Hb_008071_020 Hb_008071_020 Hb_007441_330--Hb_008071_020 Hb_000996_140--Hb_026053_020 Hb_000996_140--Hb_010175_040 Hb_003226_100 Hb_003226_100 Hb_000996_140--Hb_003226_100 Hb_002768_030 Hb_002768_030 Hb_000996_140--Hb_002768_030 Hb_003018_010 Hb_003018_010 Hb_000996_140--Hb_003018_010 Hb_131181_010 Hb_131181_010 Hb_026053_020--Hb_131181_010 Hb_000189_240 Hb_000189_240 Hb_026053_020--Hb_000189_240 Hb_026053_020--Hb_008071_020 Hb_018133_020 Hb_018133_020 Hb_026053_020--Hb_018133_020 Hb_001141_140 Hb_001141_140 Hb_026053_020--Hb_001141_140 Hb_000261_140 Hb_000261_140 Hb_010175_040--Hb_000261_140 Hb_000920_110 Hb_000920_110 Hb_010175_040--Hb_000920_110 Hb_143496_010 Hb_143496_010 Hb_010175_040--Hb_143496_010 Hb_000417_360 Hb_000417_360 Hb_010175_040--Hb_000417_360 Hb_010175_040--Hb_001141_140 Hb_001616_040 Hb_001616_040 Hb_010175_040--Hb_001616_040 Hb_003605_160 Hb_003605_160 Hb_000826_100--Hb_003605_160 Hb_000826_100--Hb_000189_240 Hb_000826_100--Hb_008071_020 Hb_026314_020 Hb_026314_020 Hb_000826_100--Hb_026314_020 Hb_000826_100--Hb_026053_020 Hb_000638_250 Hb_000638_250 Hb_000103_320--Hb_000638_250 Hb_006831_120 Hb_006831_120 Hb_000103_320--Hb_006831_120 Hb_003581_150 Hb_003581_150 Hb_000103_320--Hb_003581_150 Hb_152784_010 Hb_152784_010 Hb_000103_320--Hb_152784_010 Hb_001318_250 Hb_001318_250 Hb_000103_320--Hb_001318_250 Hb_001931_010 Hb_001931_010 Hb_008071_020--Hb_001931_010 Hb_001279_080 Hb_001279_080 Hb_008071_020--Hb_001279_080 Hb_028396_010 Hb_028396_010 Hb_008071_020--Hb_028396_010 Hb_006326_040 Hb_006326_040 Hb_008071_020--Hb_006326_040 Hb_000045_310 Hb_000045_310 Hb_008071_020--Hb_000045_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.7987 11.3765 29.3422 33.1336 21.9379 20.9475
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.8191 73.1157 40.2339 15.4493 22.1402

CAGE analysis