Hb_007445_010

Information

Type -
Description -
Location Contig7445: 4804-11092
Sequence    

Annotation

kegg
ID pmum:103330548
description putative disease resistance protein RGA1
nr
ID AAO37645.1
description NBS-LRR resistance protein RGH1 [Manihot esculenta]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID Q84XG0
description NBS-LRR resistance protein RGH1 OS=Manihot esculenta PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56660: 6535-6902 , PASA_asmbl_56661: 7287-9583 , PASA_asmbl_56662: 7287-9583 , PASA_asmbl_56663: 10089-10450 , PASA_asmbl_56664: 10451-10565
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007445_010 0.0 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
2 Hb_001511_240 0.0738798869 - - PREDICTED: uncharacterized protein LOC105133574 isoform X3 [Populus euphratica]
3 Hb_001488_220 0.0809768543 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
4 Hb_102698_010 0.0874834152 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
5 Hb_001442_060 0.0933346731 - - PREDICTED: uncharacterized protein LOC105638091 isoform X1 [Jatropha curcas]
6 Hb_000099_030 0.0974234617 - - 6-phosphogluconate dehydrogenase, putative [Ricinus communis]
7 Hb_000238_030 0.098459798 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_000062_020 0.1006943451 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_004452_110 0.1022285811 - - PREDICTED: uncharacterized protein LOC105639575 isoform X1 [Jatropha curcas]
10 Hb_009569_040 0.1037074287 - - PREDICTED: uncharacterized protein LOC105635573 [Jatropha curcas]
11 Hb_002046_160 0.1047996763 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_000981_030 0.1053625647 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105640649 [Jatropha curcas]
13 Hb_001014_210 0.1054292364 - - CYP51 [Hevea brasiliensis]
14 Hb_005463_110 0.105665941 - - PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3-like [Jatropha curcas]
15 Hb_001662_100 0.1103569398 - - PREDICTED: serine/threonine-protein kinase EDR1-like [Jatropha curcas]
16 Hb_000140_290 0.1103838417 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 [Populus euphratica]
17 Hb_000890_060 0.1107362837 - - PREDICTED: sucrose nonfermenting 4-like protein [Jatropha curcas]
18 Hb_000252_050 0.1111370442 - - PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Jatropha curcas]
19 Hb_000322_080 0.1113521766 - - hypothetical protein JCGZ_07423 [Jatropha curcas]
20 Hb_000085_450 0.1114576362 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]

Gene co-expression network

sample Hb_007445_010 Hb_007445_010 Hb_001511_240 Hb_001511_240 Hb_007445_010--Hb_001511_240 Hb_001488_220 Hb_001488_220 Hb_007445_010--Hb_001488_220 Hb_102698_010 Hb_102698_010 Hb_007445_010--Hb_102698_010 Hb_001442_060 Hb_001442_060 Hb_007445_010--Hb_001442_060 Hb_000099_030 Hb_000099_030 Hb_007445_010--Hb_000099_030 Hb_000238_030 Hb_000238_030 Hb_007445_010--Hb_000238_030 Hb_006373_010 Hb_006373_010 Hb_001511_240--Hb_006373_010 Hb_009193_120 Hb_009193_120 Hb_001511_240--Hb_009193_120 Hb_007083_030 Hb_007083_030 Hb_001511_240--Hb_007083_030 Hb_007336_010 Hb_007336_010 Hb_001511_240--Hb_007336_010 Hb_004452_110 Hb_004452_110 Hb_001511_240--Hb_004452_110 Hb_001552_030 Hb_001552_030 Hb_001488_220--Hb_001552_030 Hb_008511_020 Hb_008511_020 Hb_001488_220--Hb_008511_020 Hb_002784_030 Hb_002784_030 Hb_001488_220--Hb_002784_030 Hb_001488_220--Hb_000238_030 Hb_001789_030 Hb_001789_030 Hb_001488_220--Hb_001789_030 Hb_004037_020 Hb_004037_020 Hb_102698_010--Hb_004037_020 Hb_000890_060 Hb_000890_060 Hb_102698_010--Hb_000890_060 Hb_003517_040 Hb_003517_040 Hb_102698_010--Hb_003517_040 Hb_010142_020 Hb_010142_020 Hb_102698_010--Hb_010142_020 Hb_002890_130 Hb_002890_130 Hb_102698_010--Hb_002890_130 Hb_012286_040 Hb_012286_040 Hb_102698_010--Hb_012286_040 Hb_000062_020 Hb_000062_020 Hb_001442_060--Hb_000062_020 Hb_001442_060--Hb_000238_030 Hb_001442_060--Hb_000099_030 Hb_056691_060 Hb_056691_060 Hb_001442_060--Hb_056691_060 Hb_000001_170 Hb_000001_170 Hb_001442_060--Hb_000001_170 Hb_012760_100 Hb_012760_100 Hb_001442_060--Hb_012760_100 Hb_039946_050 Hb_039946_050 Hb_000099_030--Hb_039946_050 Hb_000099_030--Hb_000238_030 Hb_000099_030--Hb_102698_010 Hb_000453_250 Hb_000453_250 Hb_000099_030--Hb_000453_250 Hb_000099_030--Hb_000001_170 Hb_000258_110 Hb_000258_110 Hb_000238_030--Hb_000258_110 Hb_000238_030--Hb_000001_170 Hb_000238_030--Hb_102698_010 Hb_012733_070 Hb_012733_070 Hb_000238_030--Hb_012733_070 Hb_086063_020 Hb_086063_020 Hb_000238_030--Hb_086063_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.0656 13.5571 8.84202 26.2077 8.58672 16.7487
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.0195 8.8248 9.54991 19.91 20.5025

CAGE analysis