Hb_007447_010

Information

Type -
Description -
Location Contig7447: 32950-41933
Sequence    

Annotation

kegg
ID pop:POPTR_0005s07150g
description POPTRDRAFT_650672, POPTRDRAFT_650674; hypothetical protein
nr
ID XP_012089565.1
description PREDICTED: CBS domain-containing protein CBSCBSPB3 isoform X3 [Jatropha curcas]
swissprot
ID Q9LF97
description CBS domain-containing protein CBSCBSPB3 OS=Arabidopsis thaliana GN=CBSCBSPB3 PE=1 SV=1
trembl
ID A0A067JU79
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00502 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56665: 33062-36942 , PASA_asmbl_56666: 38732-68094
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007447_010 0.0 - - PREDICTED: CBS domain-containing protein CBSCBSPB3 isoform X3 [Jatropha curcas]
2 Hb_011316_110 0.0660558424 - - PREDICTED: receptor-like serine/threonine-protein kinase At4g25390 [Jatropha curcas]
3 Hb_000077_050 0.0890517012 - - PREDICTED: elongation factor G-1, mitochondrial isoform X1 [Jatropha curcas]
4 Hb_000107_100 0.0905515893 - - hypothetical protein JCGZ_16208 [Jatropha curcas]
5 Hb_022256_040 0.0927623192 - - PREDICTED: probable E3 ubiquitin-protein ligase rbrA isoform X2 [Jatropha curcas]
6 Hb_001040_170 0.0964705991 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial isoform X1 [Jatropha curcas]
7 Hb_001584_110 0.0991082126 - - PREDICTED: importin subunit alpha-4 isoform X2 [Jatropha curcas]
8 Hb_001135_160 0.0993198246 - - PREDICTED: elongator complex protein 6 [Jatropha curcas]
9 Hb_000729_050 0.1003280716 - - Pinin, putative [Ricinus communis]
10 Hb_028900_020 0.1021676758 - - unnamed protein product [Coffea canephora]
11 Hb_000984_180 0.1030913527 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO3 isoform X1 [Jatropha curcas]
12 Hb_007407_040 0.1037742785 - - ankyrin repeat-containing protein, putative [Ricinus communis]
13 Hb_001416_040 0.1045874649 - - acid phosphatase, putative [Ricinus communis]
14 Hb_000179_020 0.1053402518 - - amidase, putative [Ricinus communis]
15 Hb_023226_060 0.1082820304 - - unnamed protein product [Vitis vinifera]
16 Hb_128548_020 0.1096282533 - - PREDICTED: transmembrane protein 56-like [Jatropha curcas]
17 Hb_011794_060 0.1105392966 - - PREDICTED: beta-amylase 2, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_004440_100 0.1119999258 - - PREDICTED: transmembrane protein 53 [Jatropha curcas]
19 Hb_002997_100 0.1120700876 - - hypothetical protein JCGZ_19555 [Jatropha curcas]
20 Hb_000599_120 0.1122978871 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT34 [Jatropha curcas]

Gene co-expression network

sample Hb_007447_010 Hb_007447_010 Hb_011316_110 Hb_011316_110 Hb_007447_010--Hb_011316_110 Hb_000077_050 Hb_000077_050 Hb_007447_010--Hb_000077_050 Hb_000107_100 Hb_000107_100 Hb_007447_010--Hb_000107_100 Hb_022256_040 Hb_022256_040 Hb_007447_010--Hb_022256_040 Hb_001040_170 Hb_001040_170 Hb_007447_010--Hb_001040_170 Hb_001584_110 Hb_001584_110 Hb_007447_010--Hb_001584_110 Hb_011316_110--Hb_001584_110 Hb_002400_270 Hb_002400_270 Hb_011316_110--Hb_002400_270 Hb_000729_050 Hb_000729_050 Hb_011316_110--Hb_000729_050 Hb_011316_110--Hb_022256_040 Hb_000184_110 Hb_000184_110 Hb_011316_110--Hb_000184_110 Hb_014568_030 Hb_014568_030 Hb_000077_050--Hb_014568_030 Hb_000077_050--Hb_001584_110 Hb_003434_060 Hb_003434_060 Hb_000077_050--Hb_003434_060 Hb_000390_060 Hb_000390_060 Hb_000077_050--Hb_000390_060 Hb_000230_330 Hb_000230_330 Hb_000077_050--Hb_000230_330 Hb_000462_150 Hb_000462_150 Hb_000077_050--Hb_000462_150 Hb_001504_160 Hb_001504_160 Hb_000107_100--Hb_001504_160 Hb_012654_010 Hb_012654_010 Hb_000107_100--Hb_012654_010 Hb_017168_010 Hb_017168_010 Hb_000107_100--Hb_017168_010 Hb_000340_510 Hb_000340_510 Hb_000107_100--Hb_000340_510 Hb_000107_100--Hb_001040_170 Hb_001366_040 Hb_001366_040 Hb_000107_100--Hb_001366_040 Hb_002997_100 Hb_002997_100 Hb_022256_040--Hb_002997_100 Hb_002874_070 Hb_002874_070 Hb_022256_040--Hb_002874_070 Hb_002631_050 Hb_002631_050 Hb_022256_040--Hb_002631_050 Hb_000733_060 Hb_000733_060 Hb_022256_040--Hb_000733_060 Hb_022256_040--Hb_000230_330 Hb_022256_040--Hb_001584_110 Hb_006091_030 Hb_006091_030 Hb_001040_170--Hb_006091_030 Hb_001040_170--Hb_017168_010 Hb_000327_240 Hb_000327_240 Hb_001040_170--Hb_000327_240 Hb_005237_010 Hb_005237_010 Hb_001040_170--Hb_005237_010 Hb_001040_170--Hb_000340_510 Hb_001584_110--Hb_000230_330 Hb_001584_110--Hb_002874_070 Hb_001584_110--Hb_014568_030 Hb_011282_030 Hb_011282_030 Hb_001584_110--Hb_011282_030 Hb_001584_110--Hb_000390_060 Hb_001584_110--Hb_000462_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.4835 3.55139 3.98267 3.28363 30.4696 25.6994
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.9813 8.24809 15.239 7.74441 6.7937

CAGE analysis