Hb_007451_010

Information

Type -
Description -
Location Contig7451: 8760-9323
Sequence    

Annotation

kegg
ID rcu:RCOM_0680810
description 60S ribosome subunit biogenesis protein NIP7, putative
nr
ID XP_012083920.1
description PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Jatropha curcas]
swissprot
ID A4QND5
description 60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus tropicalis GN=nip7 PE=2 SV=1
trembl
ID A0A067K7K4
description 60S ribosome subunit biogenesis protein NIP7 homolog OS=Jatropha curcas GN=JCGZ_18864 PE=3 SV=1
Gene Ontology
ID GO:0005634
description 60s ribosome subunit biogenesis protein nip7 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 033_A23.ab1: 8661-9379

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007451_010 0.0 - - PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Jatropha curcas]
2 Hb_000220_010 0.0544029523 - - PREDICTED: uncharacterized protein LOC105630083 [Jatropha curcas]
3 Hb_156635_010 0.0567205769 - - PREDICTED: autophagy-related protein 8f [Jatropha curcas]
4 Hb_001357_150 0.058303068 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
5 Hb_002740_030 0.0715118171 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
6 Hb_001142_030 0.0778168085 - - PREDICTED: uncharacterized protein LOC105640023 [Jatropha curcas]
7 Hb_022181_030 0.0842446226 - - PREDICTED: uncharacterized protein LOC105649615 isoform X2 [Jatropha curcas]
8 Hb_001287_080 0.0844814761 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004116_060 0.0848237511 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
10 Hb_172632_120 0.0859799044 - - conserved hypothetical protein [Ricinus communis]
11 Hb_120410_010 0.0866076971 - - PREDICTED: vesicle-associated membrane protein 727-like [Solanum tuberosum]
12 Hb_008453_140 0.0866355805 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
13 Hb_003125_120 0.0881781042 - - PREDICTED: TITAN-like protein [Jatropha curcas]
14 Hb_014720_120 0.0883582 - - Phosphoenolpyruvate/phosphate translocator 1, chloroplastic -like protein [Gossypium arboreum]
15 Hb_000093_160 0.0894376698 - - PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
16 Hb_003389_040 0.0911723126 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
17 Hb_000487_210 0.0916517917 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
18 Hb_003935_020 0.0919542314 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_000334_280 0.0921766355 - - PREDICTED: protein FRA10AC1 [Jatropha curcas]
20 Hb_014109_040 0.0925043753 - - PREDICTED: probable folylpolyglutamate synthase [Jatropha curcas]

Gene co-expression network

sample Hb_007451_010 Hb_007451_010 Hb_000220_010 Hb_000220_010 Hb_007451_010--Hb_000220_010 Hb_156635_010 Hb_156635_010 Hb_007451_010--Hb_156635_010 Hb_001357_150 Hb_001357_150 Hb_007451_010--Hb_001357_150 Hb_002740_030 Hb_002740_030 Hb_007451_010--Hb_002740_030 Hb_001142_030 Hb_001142_030 Hb_007451_010--Hb_001142_030 Hb_022181_030 Hb_022181_030 Hb_007451_010--Hb_022181_030 Hb_008453_140 Hb_008453_140 Hb_000220_010--Hb_008453_140 Hb_014720_120 Hb_014720_120 Hb_000220_010--Hb_014720_120 Hb_010381_090 Hb_010381_090 Hb_000220_010--Hb_010381_090 Hb_120410_010 Hb_120410_010 Hb_000220_010--Hb_120410_010 Hb_000220_010--Hb_002740_030 Hb_156635_010--Hb_000220_010 Hb_156635_010--Hb_014720_120 Hb_156635_010--Hb_002740_030 Hb_003389_040 Hb_003389_040 Hb_156635_010--Hb_003389_040 Hb_007441_190 Hb_007441_190 Hb_156635_010--Hb_007441_190 Hb_001357_150--Hb_000220_010 Hb_005730_120 Hb_005730_120 Hb_001357_150--Hb_005730_120 Hb_001599_040 Hb_001599_040 Hb_001357_150--Hb_001599_040 Hb_013738_020 Hb_013738_020 Hb_001357_150--Hb_013738_020 Hb_172632_120 Hb_172632_120 Hb_001357_150--Hb_172632_120 Hb_002740_030--Hb_001142_030 Hb_000416_040 Hb_000416_040 Hb_002740_030--Hb_000416_040 Hb_002740_030--Hb_120410_010 Hb_002740_030--Hb_008453_140 Hb_001163_050 Hb_001163_050 Hb_002740_030--Hb_001163_050 Hb_003125_120 Hb_003125_120 Hb_001142_030--Hb_003125_120 Hb_001142_030--Hb_008453_140 Hb_001142_030--Hb_001163_050 Hb_000580_180 Hb_000580_180 Hb_001142_030--Hb_000580_180 Hb_001142_030--Hb_120410_010 Hb_022181_030--Hb_001357_150 Hb_022132_050 Hb_022132_050 Hb_022181_030--Hb_022132_050 Hb_001123_030 Hb_001123_030 Hb_022181_030--Hb_001123_030 Hb_002119_080 Hb_002119_080 Hb_022181_030--Hb_002119_080 Hb_006588_070 Hb_006588_070 Hb_022181_030--Hb_006588_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.6769 37.7748 37.0335 45.2721 34.5176 49.9268
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.0348 69.8722 23.3909 27.4767 21.8565

CAGE analysis