Hb_007451_030

Information

Type -
Description -
Location Contig7451: 11836-18315
Sequence    

Annotation

kegg
ID rcu:RCOM_0680790
description Mitochondrial deoxynucleotide carrier, putative
nr
ID XP_012083912.1
description PREDICTED: mitochondrial thiamine pyrophosphate carrier isoform X1 [Jatropha curcas]
swissprot
ID Q5IS35
description Mitochondrial thiamine pyrophosphate carrier OS=Macaca fascicularis GN=SLC25A19 PE=2 SV=1
trembl
ID A0A067JV02
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18861 PE=3 SV=1
Gene Ontology
ID GO:0005739
description mitochondrial thiamine pyrophosphate carrier

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56671: 11854-18195 , PASA_asmbl_56672: 11841-18195
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007451_030 0.0 - - PREDICTED: mitochondrial thiamine pyrophosphate carrier isoform X1 [Jatropha curcas]
2 Hb_000193_230 0.0982673621 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
3 Hb_001804_040 0.0991588917 - - conserved hypothetical protein [Ricinus communis]
4 Hb_007625_020 0.0994789522 - - PREDICTED: casein kinase II subunit alpha-like [Sesamum indicum]
5 Hb_012305_060 0.1014760437 - - protein translocase, putative [Ricinus communis]
6 Hb_000680_150 0.1023390342 - - PREDICTED: protein STU1-like [Jatropha curcas]
7 Hb_004545_160 0.1072711194 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
8 Hb_004204_030 0.1115330507 - - unknown [Populus trichocarpa]
9 Hb_001754_150 0.1117819988 - - PREDICTED: vesicle-associated membrane protein 724 [Jatropha curcas]
10 Hb_007992_030 0.1165786523 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105646951 [Jatropha curcas]
11 Hb_102864_010 0.1170146706 - - hypothetical protein POPTR_0008s14250g [Populus trichocarpa]
12 Hb_004223_230 0.1179760257 transcription factor TF Family: ARF PREDICTED: auxin response factor 5 isoform X1 [Jatropha curcas]
13 Hb_001951_110 0.1197959322 - - PREDICTED: DNA-binding protein DDB_G0278111 [Jatropha curcas]
14 Hb_000933_140 0.1212128569 - - PREDICTED: uncharacterized protein LOC105630501 [Jatropha curcas]
15 Hb_001722_040 0.1218720028 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
16 Hb_000078_030 0.1225778539 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001366_230 0.1243022978 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001035_030 0.1249778031 - - PREDICTED: probable rhamnogalacturonate lyase B isoform X1 [Jatropha curcas]
19 Hb_002221_080 0.125986223 - - PREDICTED: uncharacterized protein LOC105639992 [Jatropha curcas]
20 Hb_001454_330 0.1287491116 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]

Gene co-expression network

sample Hb_007451_030 Hb_007451_030 Hb_000193_230 Hb_000193_230 Hb_007451_030--Hb_000193_230 Hb_001804_040 Hb_001804_040 Hb_007451_030--Hb_001804_040 Hb_007625_020 Hb_007625_020 Hb_007451_030--Hb_007625_020 Hb_012305_060 Hb_012305_060 Hb_007451_030--Hb_012305_060 Hb_000680_150 Hb_000680_150 Hb_007451_030--Hb_000680_150 Hb_004545_160 Hb_004545_160 Hb_007451_030--Hb_004545_160 Hb_000078_030 Hb_000078_030 Hb_000193_230--Hb_000078_030 Hb_002298_040 Hb_002298_040 Hb_000193_230--Hb_002298_040 Hb_006787_040 Hb_006787_040 Hb_000193_230--Hb_006787_040 Hb_115919_020 Hb_115919_020 Hb_000193_230--Hb_115919_020 Hb_000193_230--Hb_012305_060 Hb_000284_010 Hb_000284_010 Hb_000193_230--Hb_000284_010 Hb_001951_110 Hb_001951_110 Hb_001804_040--Hb_001951_110 Hb_004204_030 Hb_004204_030 Hb_001804_040--Hb_004204_030 Hb_000866_300 Hb_000866_300 Hb_001804_040--Hb_000866_300 Hb_001754_150 Hb_001754_150 Hb_001804_040--Hb_001754_150 Hb_001019_090 Hb_001019_090 Hb_001804_040--Hb_001019_090 Hb_001366_230 Hb_001366_230 Hb_001804_040--Hb_001366_230 Hb_007625_020--Hb_004545_160 Hb_007625_020--Hb_012305_060 Hb_000366_100 Hb_000366_100 Hb_007625_020--Hb_000366_100 Hb_007992_030 Hb_007992_030 Hb_007625_020--Hb_007992_030 Hb_000752_060 Hb_000752_060 Hb_007625_020--Hb_000752_060 Hb_012305_060--Hb_004545_160 Hb_012305_060--Hb_000078_030 Hb_012305_060--Hb_000284_010 Hb_001386_130 Hb_001386_130 Hb_000680_150--Hb_001386_130 Hb_000590_090 Hb_000590_090 Hb_000680_150--Hb_000590_090 Hb_002681_040 Hb_002681_040 Hb_000680_150--Hb_002681_040 Hb_001514_020 Hb_001514_020 Hb_000680_150--Hb_001514_020 Hb_001493_100 Hb_001493_100 Hb_000680_150--Hb_001493_100 Hb_004545_160--Hb_000366_100 Hb_012395_100 Hb_012395_100 Hb_004545_160--Hb_012395_100 Hb_003057_050 Hb_003057_050 Hb_004545_160--Hb_003057_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
266.995 20.976 22.7462 9.47612 183.87 163.837
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
235.102 277.844 117.143 20.0471 6.96445

CAGE analysis