Hb_007451_040

Information

Type -
Description -
Location Contig7451: 19077-23321
Sequence    

Annotation

kegg
ID rcu:RCOM_0680680
description hypothetical protein
nr
ID XP_012083911.1
description PREDICTED: uncharacterized protein LOC105643411 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K6A1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18860 PE=4 SV=1
Gene Ontology
ID GO:0005739
description dynein beta ciliary

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56673: 19033-20172 , PASA_asmbl_56675: 20583-20947 , PASA_asmbl_56677: 22546-23347
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007451_040 0.0 - - PREDICTED: uncharacterized protein LOC105643411 [Jatropha curcas]
2 Hb_007263_010 0.0688658699 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
3 Hb_001541_110 0.0836206099 - - PREDICTED: sufE-like protein 2, chloroplastic isoform X2 [Jatropha curcas]
4 Hb_004994_080 0.084112423 - - PREDICTED: cell division protein FtsY homolog, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_000140_440 0.0977834315 - - PREDICTED: probable hydroxyacylglutathione hydrolase 2, chloroplast [Jatropha curcas]
6 Hb_006555_040 0.0979354004 - - PREDICTED: uncharacterized protein LOC105639405 [Jatropha curcas]
7 Hb_005162_110 0.1045305307 - - PREDICTED: uncharacterized protein LOC105648430 [Jatropha curcas]
8 Hb_002027_320 0.1056880956 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
9 Hb_007217_010 0.1087593137 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
10 Hb_001930_030 0.1090101341 - - PREDICTED: 30S ribosomal protein S10, chloroplastic [Jatropha curcas]
11 Hb_000181_060 0.109714237 - - PREDICTED: 30S ribosomal protein S20, chloroplastic [Jatropha curcas]
12 Hb_000905_120 0.110740675 - - PREDICTED: uncharacterized protein LOC105628677 [Jatropha curcas]
13 Hb_000260_430 0.1123003713 - - ribosomal protein L17, putative [Ricinus communis]
14 Hb_000284_130 0.1129588892 - - sodium-bile acid cotransporter, putative [Ricinus communis]
15 Hb_009771_060 0.1161879644 - - PREDICTED: 30S ribosomal protein S31, chloroplastic [Populus euphratica]
16 Hb_021650_010 0.1199892002 - - hypothetical protein JCGZ_09648 [Jatropha curcas]
17 Hb_002218_020 0.1209285209 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
18 Hb_002986_090 0.1217290489 - - PREDICTED: methionine aminopeptidase 1D, chloroplastic/mitochondrial [Jatropha curcas]
19 Hb_005332_080 0.1218217741 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Jatropha curcas]
20 Hb_006787_090 0.1230202179 - - PREDICTED: uncharacterized protein LOC105646282 [Jatropha curcas]

Gene co-expression network

sample Hb_007451_040 Hb_007451_040 Hb_007263_010 Hb_007263_010 Hb_007451_040--Hb_007263_010 Hb_001541_110 Hb_001541_110 Hb_007451_040--Hb_001541_110 Hb_004994_080 Hb_004994_080 Hb_007451_040--Hb_004994_080 Hb_000140_440 Hb_000140_440 Hb_007451_040--Hb_000140_440 Hb_006555_040 Hb_006555_040 Hb_007451_040--Hb_006555_040 Hb_005162_110 Hb_005162_110 Hb_007451_040--Hb_005162_110 Hb_007263_010--Hb_004994_080 Hb_002027_320 Hb_002027_320 Hb_007263_010--Hb_002027_320 Hb_000392_450 Hb_000392_450 Hb_007263_010--Hb_000392_450 Hb_007263_010--Hb_006555_040 Hb_011386_050 Hb_011386_050 Hb_007263_010--Hb_011386_050 Hb_000003_780 Hb_000003_780 Hb_001541_110--Hb_000003_780 Hb_001587_180 Hb_001587_180 Hb_001541_110--Hb_001587_180 Hb_000413_060 Hb_000413_060 Hb_001541_110--Hb_000413_060 Hb_001863_120 Hb_001863_120 Hb_001541_110--Hb_001863_120 Hb_000926_080 Hb_000926_080 Hb_001541_110--Hb_000926_080 Hb_000364_100 Hb_000364_100 Hb_004994_080--Hb_000364_100 Hb_000181_060 Hb_000181_060 Hb_004994_080--Hb_000181_060 Hb_004994_080--Hb_011386_050 Hb_004994_080--Hb_005162_110 Hb_004994_080--Hb_006555_040 Hb_000140_440--Hb_006555_040 Hb_000140_440--Hb_004994_080 Hb_155025_010 Hb_155025_010 Hb_000140_440--Hb_155025_010 Hb_002218_020 Hb_002218_020 Hb_000140_440--Hb_002218_020 Hb_000140_440--Hb_000181_060 Hb_001930_030 Hb_001930_030 Hb_006555_040--Hb_001930_030 Hb_002255_040 Hb_002255_040 Hb_006555_040--Hb_002255_040 Hb_006555_040--Hb_011386_050 Hb_005946_040 Hb_005946_040 Hb_005162_110--Hb_005946_040 Hb_021650_010 Hb_021650_010 Hb_005162_110--Hb_021650_010 Hb_000003_170 Hb_000003_170 Hb_005162_110--Hb_000003_170 Hb_005731_110 Hb_005731_110 Hb_005162_110--Hb_005731_110 Hb_000051_060 Hb_000051_060 Hb_005162_110--Hb_000051_060 Hb_003752_070 Hb_003752_070 Hb_005162_110--Hb_003752_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.68435 5.80925 33.0215 8.04304 5.92027 5.27636
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.47044 10.3603 4.25968 3.59086 16.7856

CAGE analysis