Hb_007456_020

Information

Type -
Description -
Location Contig7456: 41174-42201
Sequence    

Annotation

kegg
ID pop:POPTR_0012s033201
description hypothetical protein
nr
ID AFK44312.1
description unknown [Lotus japonicus]
swissprot
ID -
description -
trembl
ID I3SVM0
description Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
Gene Ontology
ID GO:0005886
description dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit stt3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56682: 11946-81564
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007456_020 0.0 - - unknown [Lotus japonicus]
2 Hb_099116_010 0.1186074558 - - conserved hypothetical protein [Ricinus communis]
3 Hb_050034_010 0.1266012833 - - PREDICTED: cullin-1 [Jatropha curcas]
4 Hb_102591_010 0.1467607014 - - hypothetical protein JCGZ_09876 [Jatropha curcas]
5 Hb_169656_010 0.1545829791 - - protein phosphatase, putative [Ricinus communis]
6 Hb_003780_020 0.1651193994 - - PREDICTED: prolyl 4-hydroxylase subunit alpha-1 isoform X2 [Glycine max]
7 Hb_000168_010 0.1656519553 - - PREDICTED: E3 ubiquitin-protein ligase RFWD3-like isoform X1 [Populus euphratica]
8 Hb_012678_010 0.1750562482 - - PREDICTED: outer envelope protein 61-like [Gossypium raimondii]
9 Hb_048702_010 0.1779175833 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X1 [Jatropha curcas]
10 Hb_060391_010 0.1789233476 - - nucleic acid binding protein, putative [Ricinus communis]
11 Hb_004116_170 0.182772661 - - PREDICTED: probable serine/threonine-protein kinase dyrk1 isoform X1 [Jatropha curcas]
12 Hb_000586_030 0.1829871783 - - hypothetical protein OsJ_17572 [Oryza sativa Japonica Group]
13 Hb_002611_030 0.1860819564 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
14 Hb_006274_040 0.186585816 - - PREDICTED: DENN domain and WD repeat-containing protein SCD1-like [Fragaria vesca subsp. vesca]
15 Hb_010003_010 0.1871051191 - - PREDICTED: uncharacterized protein LOC105630174 isoform X2 [Jatropha curcas]
16 Hb_004040_030 0.1977308819 - - PREDICTED: probable inactive purple acid phosphatase 28 isoform X2 [Jatropha curcas]
17 Hb_044486_030 0.1988341216 - - DMI1, partial [Cycas revoluta]
18 Hb_000077_290 0.1991578916 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000684_310 0.2000141681 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
20 Hb_002611_020 0.2006470006 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like [Populus euphratica]

Gene co-expression network

sample Hb_007456_020 Hb_007456_020 Hb_099116_010 Hb_099116_010 Hb_007456_020--Hb_099116_010 Hb_050034_010 Hb_050034_010 Hb_007456_020--Hb_050034_010 Hb_102591_010 Hb_102591_010 Hb_007456_020--Hb_102591_010 Hb_169656_010 Hb_169656_010 Hb_007456_020--Hb_169656_010 Hb_003780_020 Hb_003780_020 Hb_007456_020--Hb_003780_020 Hb_000168_010 Hb_000168_010 Hb_007456_020--Hb_000168_010 Hb_099116_010--Hb_000168_010 Hb_004881_030 Hb_004881_030 Hb_099116_010--Hb_004881_030 Hb_099116_010--Hb_003780_020 Hb_000004_020 Hb_000004_020 Hb_099116_010--Hb_000004_020 Hb_000586_030 Hb_000586_030 Hb_099116_010--Hb_000586_030 Hb_050034_010--Hb_102591_010 Hb_050034_010--Hb_099116_010 Hb_165402_010 Hb_165402_010 Hb_050034_010--Hb_165402_010 Hb_050034_010--Hb_000168_010 Hb_060391_010 Hb_060391_010 Hb_050034_010--Hb_060391_010 Hb_102591_010--Hb_165402_010 Hb_181328_010 Hb_181328_010 Hb_102591_010--Hb_181328_010 Hb_002611_020 Hb_002611_020 Hb_102591_010--Hb_002611_020 Hb_000077_290 Hb_000077_290 Hb_102591_010--Hb_000077_290 Hb_000254_070 Hb_000254_070 Hb_169656_010--Hb_000254_070 Hb_132101_010 Hb_132101_010 Hb_169656_010--Hb_132101_010 Hb_011214_110 Hb_011214_110 Hb_169656_010--Hb_011214_110 Hb_014497_060 Hb_014497_060 Hb_169656_010--Hb_014497_060 Hb_001689_040 Hb_001689_040 Hb_169656_010--Hb_001689_040 Hb_000244_260 Hb_000244_260 Hb_169656_010--Hb_000244_260 Hb_012678_010 Hb_012678_010 Hb_003780_020--Hb_012678_010 Hb_012678_020 Hb_012678_020 Hb_003780_020--Hb_012678_020 Hb_007558_100 Hb_007558_100 Hb_003780_020--Hb_007558_100 Hb_002150_040 Hb_002150_040 Hb_003780_020--Hb_002150_040 Hb_005218_020 Hb_005218_020 Hb_003780_020--Hb_005218_020 Hb_003780_020--Hb_004881_030 Hb_000215_310 Hb_000215_310 Hb_000168_010--Hb_000215_310 Hb_004040_030 Hb_004040_030 Hb_000168_010--Hb_004040_030 Hb_004466_060 Hb_004466_060 Hb_000168_010--Hb_004466_060 Hb_000168_010--Hb_000586_030 Hb_000168_010--Hb_002611_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.83777 2.60932 5.7046 35.558 4.94963 24.7054
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.01798 3.44321 3.35758 18.3303 21.8518

CAGE analysis