Hb_007456_040

Information

Type -
Description -
Location Contig7456: 79655-81655
Sequence    

Annotation

kegg
ID rcu:RCOM_1669180
description oligosaccharyl transferase, putative (EC:2.4.1.119)
nr
ID XP_012079356.1
description PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B [Jatropha curcas]
swissprot
ID Q9FX21
description Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B OS=Arabidopsis thaliana GN=STT3B PE=2 SV=1
trembl
ID A0A067LN03
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17416 PE=4 SV=1
Gene Ontology
ID GO:0005886
description dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit stt3b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56682: 11946-81564
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007456_040 0.0 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B [Jatropha curcas]
2 Hb_000284_120 0.0923560631 - - PREDICTED: uncharacterized protein LOC105629656 [Jatropha curcas]
3 Hb_001504_040 0.0948878046 - - PREDICTED: factor of DNA methylation 1-like [Jatropha curcas]
4 Hb_000365_030 0.1027005609 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
5 Hb_002814_060 0.1045654061 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 [Jatropha curcas]
6 Hb_041828_010 0.1057785396 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
7 Hb_118840_030 0.1086387565 - - PREDICTED: vacuolar protein sorting-associated protein 18 homolog [Jatropha curcas]
8 Hb_001431_120 0.1087043428 - - PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like [Jatropha curcas]
9 Hb_000384_080 0.1116753319 - - PREDICTED: RING-H2 finger protein ATL7-like isoform X2 [Jatropha curcas]
10 Hb_158092_080 0.112581248 - - hypothetical protein JCGZ_23092 [Jatropha curcas]
11 Hb_000261_100 0.113500916 - - PREDICTED: beta-galactosidase 9 isoform X2 [Jatropha curcas]
12 Hb_002909_090 0.1139024078 - - PREDICTED: 4-alpha-glucanotransferase DPE2 [Jatropha curcas]
13 Hb_001401_060 0.1156198147 - - PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Jatropha curcas]
14 Hb_086287_010 0.1175459803 - - PREDICTED: aminoacylase-1 isoform X1 [Jatropha curcas]
15 Hb_002631_140 0.1180752799 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [Jatropha curcas]
16 Hb_000264_350 0.1185215418 - - PREDICTED: uncharacterized protein LOC105649541 [Jatropha curcas]
17 Hb_127552_040 0.1187174266 - - Uncharacterized protein L484_000643 [Morus notabilis]
18 Hb_000780_190 0.1188155002 transcription factor TF Family: Orphans PREDICTED: histidine kinase 2 [Jatropha curcas]
19 Hb_000004_030 0.119069986 - - PREDICTED: Niemann-Pick C1 protein [Jatropha curcas]
20 Hb_003913_110 0.119431516 - - PREDICTED: uncharacterized protein LOC105640319 [Jatropha curcas]

Gene co-expression network

sample Hb_007456_040 Hb_007456_040 Hb_000284_120 Hb_000284_120 Hb_007456_040--Hb_000284_120 Hb_001504_040 Hb_001504_040 Hb_007456_040--Hb_001504_040 Hb_000365_030 Hb_000365_030 Hb_007456_040--Hb_000365_030 Hb_002814_060 Hb_002814_060 Hb_007456_040--Hb_002814_060 Hb_041828_010 Hb_041828_010 Hb_007456_040--Hb_041828_010 Hb_118840_030 Hb_118840_030 Hb_007456_040--Hb_118840_030 Hb_000004_030 Hb_000004_030 Hb_000284_120--Hb_000004_030 Hb_001431_120 Hb_001431_120 Hb_000284_120--Hb_001431_120 Hb_000284_120--Hb_041828_010 Hb_000264_350 Hb_000264_350 Hb_000284_120--Hb_000264_350 Hb_000960_040 Hb_000960_040 Hb_000284_120--Hb_000960_040 Hb_001369_040 Hb_001369_040 Hb_001504_040--Hb_001369_040 Hb_005053_010 Hb_005053_010 Hb_001504_040--Hb_005053_010 Hb_009296_010 Hb_009296_010 Hb_001504_040--Hb_009296_010 Hb_000035_410 Hb_000035_410 Hb_001504_040--Hb_000035_410 Hb_012490_060 Hb_012490_060 Hb_001504_040--Hb_012490_060 Hb_160459_040 Hb_160459_040 Hb_001504_040--Hb_160459_040 Hb_000130_020 Hb_000130_020 Hb_000365_030--Hb_000130_020 Hb_178968_050 Hb_178968_050 Hb_000365_030--Hb_178968_050 Hb_001733_030 Hb_001733_030 Hb_000365_030--Hb_001733_030 Hb_004109_370 Hb_004109_370 Hb_000365_030--Hb_004109_370 Hb_000030_060 Hb_000030_060 Hb_000365_030--Hb_000030_060 Hb_000635_030 Hb_000635_030 Hb_000365_030--Hb_000635_030 Hb_086287_010 Hb_086287_010 Hb_002814_060--Hb_086287_010 Hb_006508_030 Hb_006508_030 Hb_002814_060--Hb_006508_030 Hb_074197_020 Hb_074197_020 Hb_002814_060--Hb_074197_020 Hb_001194_020 Hb_001194_020 Hb_002814_060--Hb_001194_020 Hb_002784_030 Hb_002784_030 Hb_002814_060--Hb_002784_030 Hb_008484_010 Hb_008484_010 Hb_041828_010--Hb_008484_010 Hb_041828_010--Hb_000004_030 Hb_000780_190 Hb_000780_190 Hb_041828_010--Hb_000780_190 Hb_000345_360 Hb_000345_360 Hb_041828_010--Hb_000345_360 Hb_000347_560 Hb_000347_560 Hb_041828_010--Hb_000347_560 Hb_004223_290 Hb_004223_290 Hb_041828_010--Hb_004223_290 Hb_002260_080 Hb_002260_080 Hb_118840_030--Hb_002260_080 Hb_001977_010 Hb_001977_010 Hb_118840_030--Hb_001977_010 Hb_011287_080 Hb_011287_080 Hb_118840_030--Hb_011287_080 Hb_030627_060 Hb_030627_060 Hb_118840_030--Hb_030627_060 Hb_000446_120 Hb_000446_120 Hb_118840_030--Hb_000446_120 Hb_000046_180 Hb_000046_180 Hb_118840_030--Hb_000046_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.45966 8.58337 9.20767 11.2131 17.3149 17.5642
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.04752 2.22915 4.20717 18.4438 16.1132

CAGE analysis