Hb_007462_020

Information

Type -
Description -
Location Contig7462: 25241-28614
Sequence    

Annotation

kegg
ID rcu:RCOM_1113060
description leucine-rich repeat receptor protein kinase exs precursor, putative (EC:1.3.1.74)
nr
ID XP_002531725.1
description leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
swissprot
ID Q9C9H7
description Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2
trembl
ID B9T0F6
description Leucine-rich repeat receptor protein kinase exs, putative OS=Ricinus communis GN=RCOM_1113060 PE=4 SV=1
Gene Ontology
ID GO:0003824
description disease resistance family protein lrr family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007462_020 0.0 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
2 Hb_004017_030 0.0625619549 - - PREDICTED: 2-hydroxyisoflavanone dehydratase-like [Jatropha curcas]
3 Hb_003767_060 0.0783634189 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
4 Hb_001369_340 0.0804384387 - - Peroxisomal membrane protein 11B [Theobroma cacao]
5 Hb_000460_040 0.0855368182 - - PREDICTED: protein phosphatase 2C 57 [Jatropha curcas]
6 Hb_000155_020 0.0857227404 - - PREDICTED: triose phosphate/phosphate translocator TPT, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_000025_700 0.0910500275 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
8 Hb_005211_080 0.0925882065 - - hypothetical protein POPTR_0010s13740g [Populus trichocarpa]
9 Hb_002010_030 0.0977588356 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
10 Hb_001159_050 0.0982966803 - - PREDICTED: uncharacterized protein LOC105645952 [Jatropha curcas]
11 Hb_000270_090 0.1023276078 - - nitrate transporter, putative [Ricinus communis]
12 Hb_000120_490 0.1041705639 - - PREDICTED: MORC family CW-type zinc finger protein 3-like [Jatropha curcas]
13 Hb_001321_010 0.1041749866 - - HIGH-CHLOROPHYLL-FLUORESCENCE 101 family protein [Populus trichocarpa]
14 Hb_005433_020 0.104826347 - - PREDICTED: multicopper oxidase LPR1 [Jatropha curcas]
15 Hb_000088_230 0.1052282814 - - hypothetical protein POPTR_0013s11340g [Populus trichocarpa]
16 Hb_003373_050 0.1076932818 - - receptor protein kinase zmpk1, putative [Ricinus communis]
17 Hb_003777_090 0.108533296 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
18 Hb_007597_030 0.1086432257 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_000638_220 0.1087007273 - - PREDICTED: photosystem I reaction center subunit N, chloroplastic [Jatropha curcas]
20 Hb_006106_010 0.1087510161 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_007462_020 Hb_007462_020 Hb_004017_030 Hb_004017_030 Hb_007462_020--Hb_004017_030 Hb_003767_060 Hb_003767_060 Hb_007462_020--Hb_003767_060 Hb_001369_340 Hb_001369_340 Hb_007462_020--Hb_001369_340 Hb_000460_040 Hb_000460_040 Hb_007462_020--Hb_000460_040 Hb_000155_020 Hb_000155_020 Hb_007462_020--Hb_000155_020 Hb_000025_700 Hb_000025_700 Hb_007462_020--Hb_000025_700 Hb_004017_030--Hb_000155_020 Hb_004017_030--Hb_001369_340 Hb_004017_030--Hb_003767_060 Hb_010136_010 Hb_010136_010 Hb_004017_030--Hb_010136_010 Hb_002284_160 Hb_002284_160 Hb_004017_030--Hb_002284_160 Hb_003767_060--Hb_001369_340 Hb_002010_030 Hb_002010_030 Hb_003767_060--Hb_002010_030 Hb_003209_150 Hb_003209_150 Hb_003767_060--Hb_003209_150 Hb_002818_160 Hb_002818_160 Hb_003767_060--Hb_002818_160 Hb_001369_340--Hb_000025_700 Hb_004117_380 Hb_004117_380 Hb_001369_340--Hb_004117_380 Hb_001369_340--Hb_003209_150 Hb_000088_230 Hb_000088_230 Hb_000460_040--Hb_000088_230 Hb_005329_010 Hb_005329_010 Hb_000460_040--Hb_005329_010 Hb_001699_140 Hb_001699_140 Hb_000460_040--Hb_001699_140 Hb_007477_060 Hb_007477_060 Hb_000460_040--Hb_007477_060 Hb_003494_090 Hb_003494_090 Hb_000460_040--Hb_003494_090 Hb_005211_080 Hb_005211_080 Hb_000460_040--Hb_005211_080 Hb_011013_040 Hb_011013_040 Hb_000155_020--Hb_011013_040 Hb_001159_050 Hb_001159_050 Hb_000155_020--Hb_001159_050 Hb_012395_090 Hb_012395_090 Hb_000155_020--Hb_012395_090 Hb_002007_220 Hb_002007_220 Hb_000155_020--Hb_002007_220 Hb_000155_020--Hb_010136_010 Hb_078954_030 Hb_078954_030 Hb_000025_700--Hb_078954_030 Hb_001424_010 Hb_001424_010 Hb_000025_700--Hb_001424_010 Hb_179129_010 Hb_179129_010 Hb_000025_700--Hb_179129_010 Hb_004346_050 Hb_004346_050 Hb_000025_700--Hb_004346_050 Hb_016371_010 Hb_016371_010 Hb_000025_700--Hb_016371_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.254289 1.0879 0.371294 0 0.00522833
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0271448 0 0 0.0211735 1.1863

CAGE analysis