Hb_007472_070

Information

Type -
Description -
Location Contig7472: 171893-178211
Sequence    

Annotation

kegg
ID rcu:RCOM_0867880
description cir, putative
nr
ID XP_002519943.1
description cir, putative [Ricinus communis]
swissprot
ID Q8VZ67
description Uncharacterized zinc finger CCHC domain-containing protein At4g19190 OS=Arabidopsis thaliana GN=At4g19190 PE=2 SV=1
trembl
ID B9S1S8
description Cir, putative OS=Ricinus communis GN=RCOM_0867880 PE=4 SV=1
Gene Ontology
ID GO:0003676
description uncharacterized zinc finger cchc domain-containing protein at4g19190

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56698: 171908-188147
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007472_070 0.0 - - cir, putative [Ricinus communis]
2 Hb_004705_170 0.0498816576 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
3 Hb_000778_010 0.0624055943 - - hypothetical protein [Bacillus subtilis]
4 Hb_000699_150 0.0638005211 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
5 Hb_000215_300 0.0662692517 - - mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
6 Hb_000347_250 0.0675863103 - - PREDICTED: uncharacterized protein LOC105133971 [Populus euphratica]
7 Hb_006059_040 0.0696703412 transcription factor TF Family: SOH1 hypothetical protein PHAVU_007G063000g [Phaseolus vulgaris]
8 Hb_004607_090 0.0710474807 - - PREDICTED: uncharacterized protein LOC105648257 [Jatropha curcas]
9 Hb_002849_130 0.0714035705 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
10 Hb_003883_060 0.0718418271 transcription factor TF Family: BSD PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Jatropha curcas]
11 Hb_012239_070 0.0720095834 - - PREDICTED: uncharacterized protein LOC105634113 [Jatropha curcas]
12 Hb_163175_010 0.0726196484 - - hypothetical protein CISIN_1g036035mg, partial [Citrus sinensis]
13 Hb_000365_230 0.0726226919 - - PREDICTED: uncharacterized protein LOC105649056 [Jatropha curcas]
14 Hb_164390_010 0.0732559565 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
15 Hb_000976_140 0.0740102644 - - PREDICTED: uncharacterized protein LOC105646208 isoform X1 [Jatropha curcas]
16 Hb_000521_330 0.0749642656 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000392_420 0.0767459965 - - PREDICTED: probable aldehyde dehydrogenase isoform X1 [Jatropha curcas]
18 Hb_012092_050 0.0769456988 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
19 Hb_183433_010 0.0771435411 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
20 Hb_189216_010 0.077155333 - - PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007472_070 Hb_007472_070 Hb_004705_170 Hb_004705_170 Hb_007472_070--Hb_004705_170 Hb_000778_010 Hb_000778_010 Hb_007472_070--Hb_000778_010 Hb_000699_150 Hb_000699_150 Hb_007472_070--Hb_000699_150 Hb_000215_300 Hb_000215_300 Hb_007472_070--Hb_000215_300 Hb_000347_250 Hb_000347_250 Hb_007472_070--Hb_000347_250 Hb_006059_040 Hb_006059_040 Hb_007472_070--Hb_006059_040 Hb_004705_170--Hb_000215_300 Hb_000345_160 Hb_000345_160 Hb_004705_170--Hb_000345_160 Hb_004037_020 Hb_004037_020 Hb_004705_170--Hb_004037_020 Hb_004705_170--Hb_000778_010 Hb_163175_010 Hb_163175_010 Hb_004705_170--Hb_163175_010 Hb_000392_420 Hb_000392_420 Hb_000778_010--Hb_000392_420 Hb_000663_060 Hb_000663_060 Hb_000778_010--Hb_000663_060 Hb_000365_230 Hb_000365_230 Hb_000778_010--Hb_000365_230 Hb_164390_010 Hb_164390_010 Hb_000778_010--Hb_164390_010 Hb_000173_280 Hb_000173_280 Hb_000778_010--Hb_000173_280 Hb_183433_010 Hb_183433_010 Hb_000699_150--Hb_183433_010 Hb_004333_040 Hb_004333_040 Hb_000699_150--Hb_004333_040 Hb_003098_070 Hb_003098_070 Hb_000699_150--Hb_003098_070 Hb_000699_150--Hb_000365_230 Hb_000176_020 Hb_000176_020 Hb_000699_150--Hb_000176_020 Hb_086063_020 Hb_086063_020 Hb_000215_300--Hb_086063_020 Hb_000215_300--Hb_000345_160 Hb_000258_110 Hb_000258_110 Hb_000215_300--Hb_000258_110 Hb_000215_300--Hb_004037_020 Hb_000292_100 Hb_000292_100 Hb_000347_250--Hb_000292_100 Hb_062226_130 Hb_062226_130 Hb_000347_250--Hb_062226_130 Hb_012022_040 Hb_012022_040 Hb_000347_250--Hb_012022_040 Hb_002849_130 Hb_002849_130 Hb_000347_250--Hb_002849_130 Hb_001259_050 Hb_001259_050 Hb_000347_250--Hb_001259_050 Hb_000069_380 Hb_000069_380 Hb_006059_040--Hb_000069_380 Hb_000708_030 Hb_000708_030 Hb_006059_040--Hb_000708_030 Hb_005730_040 Hb_005730_040 Hb_006059_040--Hb_005730_040 Hb_000976_140 Hb_000976_140 Hb_006059_040--Hb_000976_140 Hb_006570_080 Hb_006570_080 Hb_006059_040--Hb_006570_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.67797 12.2871 12.4159 17.0635 7.50435 8.08462
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7303 13.0775 7.59714 13.8321 14.0079

CAGE analysis