Hb_007474_020

Information

Type -
Description -
Location Contig7474: 25995-30650
Sequence    

Annotation

kegg
ID rcu:RCOM_0195650
description multicopper oxidase, putative (EC:1.10.3.3)
nr
ID XP_002532575.1
description multicopper oxidase, putative [Ricinus communis]
swissprot
ID Q9SU40
description Monocopper oxidase-like protein SKU5 OS=Arabidopsis thaliana GN=SKU5 PE=1 SV=1
trembl
ID B9T2V6
description Multicopper oxidase, putative OS=Ricinus communis GN=RCOM_0195650 PE=4 SV=1
Gene Ontology
ID GO:0005774
description monocopper oxidase-like protein sku5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56703: 26027-30705 , PASA_asmbl_56704: 26392-26629
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007474_020 0.0 - - multicopper oxidase, putative [Ricinus communis]
2 Hb_101133_050 0.085758225 - - PREDICTED: condensin complex subunit 3 [Jatropha curcas]
3 Hb_001390_040 0.0950398786 - - PREDICTED: uncharacterized protein LOC105635987 [Jatropha curcas]
4 Hb_000856_390 0.0973043911 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001307_150 0.0974913163 - - receptor protein kinase, putative [Ricinus communis]
6 Hb_000317_120 0.0980233836 - - PREDICTED: uncharacterized protein LOC105647000 [Jatropha curcas]
7 Hb_118282_020 0.098241509 - - PREDICTED: uncharacterized protein LOC105631532 isoform X3 [Jatropha curcas]
8 Hb_000038_070 0.1002123407 - - conserved hypothetical protein [Ricinus communis]
9 Hb_016898_020 0.1041285569 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105120899 [Populus euphratica]
10 Hb_000418_040 0.1075028116 - - hypothetical protein RCOM_0377590 [Ricinus communis]
11 Hb_004225_160 0.1118533025 - - PREDICTED: kiwellin-like [Jatropha curcas]
12 Hb_000069_650 0.1131402162 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001565_090 0.1141410607 - - PREDICTED: uncharacterized protein LOC105637840 isoform X1 [Jatropha curcas]
14 Hb_003106_090 0.1148003357 transcription factor TF Family: E2F-DP E2F, putative [Ricinus communis]
15 Hb_001085_160 0.1160946689 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
16 Hb_007245_030 0.1163959131 - - conserved hypothetical protein [Ricinus communis]
17 Hb_012150_040 0.1165016355 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002374_090 0.1169800872 - - PREDICTED: cyclin-A1-1 [Jatropha curcas]
19 Hb_024714_090 0.1212521005 rubber biosynthesis Gene Name: SRPP3 PREDICTED: stress-related protein [Jatropha curcas]
20 Hb_000614_200 0.1212581961 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]

Gene co-expression network

sample Hb_007474_020 Hb_007474_020 Hb_101133_050 Hb_101133_050 Hb_007474_020--Hb_101133_050 Hb_001390_040 Hb_001390_040 Hb_007474_020--Hb_001390_040 Hb_000856_390 Hb_000856_390 Hb_007474_020--Hb_000856_390 Hb_001307_150 Hb_001307_150 Hb_007474_020--Hb_001307_150 Hb_000317_120 Hb_000317_120 Hb_007474_020--Hb_000317_120 Hb_118282_020 Hb_118282_020 Hb_007474_020--Hb_118282_020 Hb_002311_090 Hb_002311_090 Hb_101133_050--Hb_002311_090 Hb_101133_050--Hb_001307_150 Hb_016898_020 Hb_016898_020 Hb_101133_050--Hb_016898_020 Hb_101133_050--Hb_000317_120 Hb_005276_090 Hb_005276_090 Hb_101133_050--Hb_005276_090 Hb_001390_040--Hb_001307_150 Hb_000527_020 Hb_000527_020 Hb_001390_040--Hb_000527_020 Hb_000890_140 Hb_000890_140 Hb_001390_040--Hb_000890_140 Hb_001390_040--Hb_000856_390 Hb_003847_060 Hb_003847_060 Hb_001390_040--Hb_003847_060 Hb_000856_390--Hb_001307_150 Hb_000856_390--Hb_016898_020 Hb_000038_070 Hb_000038_070 Hb_000856_390--Hb_000038_070 Hb_007245_030 Hb_007245_030 Hb_000856_390--Hb_007245_030 Hb_000480_060 Hb_000480_060 Hb_000856_390--Hb_000480_060 Hb_000085_360 Hb_000085_360 Hb_000856_390--Hb_000085_360 Hb_001307_150--Hb_000480_060 Hb_001307_150--Hb_016898_020 Hb_001699_270 Hb_001699_270 Hb_001307_150--Hb_001699_270 Hb_001307_150--Hb_003847_060 Hb_000345_450 Hb_000345_450 Hb_001307_150--Hb_000345_450 Hb_001950_090 Hb_001950_090 Hb_000317_120--Hb_001950_090 Hb_000317_120--Hb_000856_390 Hb_000317_120--Hb_016898_020 Hb_012150_040 Hb_012150_040 Hb_000317_120--Hb_012150_040 Hb_000576_140 Hb_000576_140 Hb_000317_120--Hb_000576_140 Hb_003106_090 Hb_003106_090 Hb_000317_120--Hb_003106_090 Hb_004774_080 Hb_004774_080 Hb_118282_020--Hb_004774_080 Hb_118282_020--Hb_000527_020 Hb_005398_050 Hb_005398_050 Hb_118282_020--Hb_005398_050 Hb_000418_040 Hb_000418_040 Hb_118282_020--Hb_000418_040 Hb_118282_020--Hb_001307_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.302821 7.88268 118.063 68.8062 0.156733 0.106529
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.26743 2.20141 0.86132 7.45809 7.2693

CAGE analysis