Hb_007477_010

Information

Type -
Description -
Location Contig7477: 5046-6605
Sequence    

Annotation

kegg
ID pda:103717945
description probable indole-3-pyruvate monooxygenase YUCCA9
nr
ID XP_008804753.1
description PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA9 [Phoenix dactylifera]
swissprot
ID Q5L2G3
description Uncharacterized oxidoreductase CzcO-like OS=Geobacillus kaustophilus (strain HTA426) GN=GK0582 PE=4 SV=1
trembl
ID A0A078FIG7
description Flavin-containing monooxygenase OS=Brassica napus GN=BnaA08g13610D PE=3 SV=1
Gene Ontology
ID GO:0004499
description probable indole-3-pyruvate monooxygenase yucca8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56705: 5991-6611
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007477_010 0.0 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA9 [Phoenix dactylifera]
2 Hb_000185_180 0.0379944724 - - hypothetical protein CISIN_1g037968mg, partial [Citrus sinensis]
3 Hb_003427_030 0.068821817 - - -
4 Hb_000815_010 0.0715164479 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105117338 [Populus euphratica]
5 Hb_001141_270 0.0863581975 - - PREDICTED: uncharacterized protein LOC105632005 [Jatropha curcas]
6 Hb_002224_020 0.0995265738 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
7 Hb_007317_050 0.1005012473 - - hypothetical protein POPTR_0009s16550g [Populus trichocarpa]
8 Hb_000109_200 0.1019938315 - - hypothetical protein CISIN_1g037825mg [Citrus sinensis]
9 Hb_000020_170 0.1056380407 - - PREDICTED: aspartic proteinase PCS1 [Jatropha curcas]
10 Hb_004933_010 0.1086820704 - - hypothetical protein POPTR_0018s10810g [Populus trichocarpa]
11 Hb_050898_040 0.1090140095 - - -
12 Hb_001863_330 0.1140478089 - - RNA-binding region-containing protein, putative [Ricinus communis]
13 Hb_005666_010 0.1165615083 - - PREDICTED: uncharacterized protein LOC105643999 [Jatropha curcas]
14 Hb_000666_040 0.1166546117 - - PREDICTED: MLP-like protein 34 [Vitis vinifera]
15 Hb_174639_010 0.1184565113 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_016734_110 0.1193382653 transcription factor TF Family: MYB-related hypothetical protein POPTR_0005s12390g [Populus trichocarpa]
17 Hb_001568_040 0.1201338144 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001635_140 0.1224938395 - - protein with unknown function [Ricinus communis]
19 Hb_005353_010 0.1235196328 - - Pectinesterase-1 precursor, putative [Ricinus communis]
20 Hb_029883_010 0.1250123483 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_007477_010 Hb_007477_010 Hb_000185_180 Hb_000185_180 Hb_007477_010--Hb_000185_180 Hb_003427_030 Hb_003427_030 Hb_007477_010--Hb_003427_030 Hb_000815_010 Hb_000815_010 Hb_007477_010--Hb_000815_010 Hb_001141_270 Hb_001141_270 Hb_007477_010--Hb_001141_270 Hb_002224_020 Hb_002224_020 Hb_007477_010--Hb_002224_020 Hb_007317_050 Hb_007317_050 Hb_007477_010--Hb_007317_050 Hb_000185_180--Hb_003427_030 Hb_000185_180--Hb_002224_020 Hb_001863_330 Hb_001863_330 Hb_000185_180--Hb_001863_330 Hb_000185_180--Hb_000815_010 Hb_174639_010 Hb_174639_010 Hb_000185_180--Hb_174639_010 Hb_003427_030--Hb_002224_020 Hb_149882_010 Hb_149882_010 Hb_003427_030--Hb_149882_010 Hb_087992_010 Hb_087992_010 Hb_003427_030--Hb_087992_010 Hb_000789_160 Hb_000789_160 Hb_003427_030--Hb_000789_160 Hb_000815_010--Hb_001141_270 Hb_005666_010 Hb_005666_010 Hb_000815_010--Hb_005666_010 Hb_002999_020 Hb_002999_020 Hb_000815_010--Hb_002999_020 Hb_000742_040 Hb_000742_040 Hb_000815_010--Hb_000742_040 Hb_016734_110 Hb_016734_110 Hb_000815_010--Hb_016734_110 Hb_001141_270--Hb_005666_010 Hb_001141_270--Hb_000185_180 Hb_001141_270--Hb_002999_020 Hb_001141_270--Hb_000742_040 Hb_002224_020--Hb_149882_010 Hb_002224_020--Hb_087992_010 Hb_002224_020--Hb_001863_330 Hb_127839_010 Hb_127839_010 Hb_002224_020--Hb_127839_010 Hb_000109_200 Hb_000109_200 Hb_007317_050--Hb_000109_200 Hb_005353_010 Hb_005353_010 Hb_007317_050--Hb_005353_010 Hb_000020_170 Hb_000020_170 Hb_007317_050--Hb_000020_170 Hb_007317_050--Hb_016734_110 Hb_000666_040 Hb_000666_040 Hb_007317_050--Hb_000666_040 Hb_031012_030 Hb_031012_030 Hb_007317_050--Hb_031012_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.209775 0.476066 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0131433 0.0677849

CAGE analysis