Hb_007477_050

Information

Type -
Description -
Location Contig7477: 44597-49920
Sequence    

Annotation

kegg
ID pop:POPTR_0014s18550g
description POPTRDRAFT_243385; hypothetical protein
nr
ID XP_012085183.1
description PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Jatropha curcas]
swissprot
ID Q9SRY4
description Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana GN=LPA1 PE=1 SV=1
trembl
ID A0A067JRC5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17595 PE=4 SV=1
Gene Ontology
ID GO:0009507
description protein low psii accumulation chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56710: 44671-48663 , PASA_asmbl_56711: 47306-48663 , PASA_asmbl_56712: 48881-49908
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007477_050 0.0 - - PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Jatropha curcas]
2 Hb_000172_440 0.0897210423 - - PREDICTED: NADPH-dependent 1-acyldihydroxyacetone phosphate reductase [Jatropha curcas]
3 Hb_000189_480 0.0985502683 - - PREDICTED: uncharacterized protein LOC105111904 isoform X2 [Populus euphratica]
4 Hb_001104_130 0.1049898832 - - C-14 sterol reductase, putative [Ricinus communis]
5 Hb_003994_300 0.1091228336 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002400_320 0.1185706126 - - conserved hypothetical protein [Ricinus communis]
7 Hb_009661_030 0.121568021 - - PREDICTED: SPX and EXS domain-containing protein 1-like [Jatropha curcas]
8 Hb_027445_030 0.1253017298 - - F-box/LRR-repeat protein, putative [Ricinus communis]
9 Hb_077549_010 0.1299069854 - - PREDICTED: uncharacterized protein LOC105644817 isoform X1 [Jatropha curcas]
10 Hb_008406_180 0.1327970572 - - RING/U-box superfamily protein isoform 2 [Theobroma cacao]
11 Hb_002955_020 0.1361589615 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
12 Hb_113818_010 0.1370739019 - - Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis]
13 Hb_000327_110 0.1377016851 - - hypothetical protein JCGZ_06657 [Jatropha curcas]
14 Hb_000107_110 0.1385554834 - - nucleic acid binding protein, putative [Ricinus communis]
15 Hb_000703_100 0.13922711 - - PREDICTED: bifunctional riboflavin kinase/FMN phosphatase-like [Jatropha curcas]
16 Hb_024184_010 0.1429994504 - - PREDICTED: clustered mitochondria protein-like isoform X1 [Citrus sinensis]
17 Hb_000240_030 0.1444804877 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000796_150 0.1446763452 - - PREDICTED: uncharacterized protein LOC105136996 isoform X1 [Populus euphratica]
19 Hb_015934_120 0.1447884949 - - PREDICTED: callose synthase 7 [Vitis vinifera]
20 Hb_174865_040 0.1450356326 - - PREDICTED: crt homolog 1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_007477_050 Hb_007477_050 Hb_000172_440 Hb_000172_440 Hb_007477_050--Hb_000172_440 Hb_000189_480 Hb_000189_480 Hb_007477_050--Hb_000189_480 Hb_001104_130 Hb_001104_130 Hb_007477_050--Hb_001104_130 Hb_003994_300 Hb_003994_300 Hb_007477_050--Hb_003994_300 Hb_002400_320 Hb_002400_320 Hb_007477_050--Hb_002400_320 Hb_009661_030 Hb_009661_030 Hb_007477_050--Hb_009661_030 Hb_015934_120 Hb_015934_120 Hb_000172_440--Hb_015934_120 Hb_006683_070 Hb_006683_070 Hb_000172_440--Hb_006683_070 Hb_000327_110 Hb_000327_110 Hb_000172_440--Hb_000327_110 Hb_005800_030 Hb_005800_030 Hb_000172_440--Hb_005800_030 Hb_000172_440--Hb_009661_030 Hb_001504_030 Hb_001504_030 Hb_000189_480--Hb_001504_030 Hb_113818_010 Hb_113818_010 Hb_000189_480--Hb_113818_010 Hb_000320_340 Hb_000320_340 Hb_000189_480--Hb_000320_340 Hb_000140_340 Hb_000140_340 Hb_000189_480--Hb_000140_340 Hb_001157_230 Hb_001157_230 Hb_000189_480--Hb_001157_230 Hb_004881_030 Hb_004881_030 Hb_001104_130--Hb_004881_030 Hb_000107_110 Hb_000107_110 Hb_001104_130--Hb_000107_110 Hb_002226_080 Hb_002226_080 Hb_001104_130--Hb_002226_080 Hb_001104_130--Hb_009661_030 Hb_000014_040 Hb_000014_040 Hb_001104_130--Hb_000014_040 Hb_000004_020 Hb_000004_020 Hb_001104_130--Hb_000004_020 Hb_000665_190 Hb_000665_190 Hb_003994_300--Hb_000665_190 Hb_027445_030 Hb_027445_030 Hb_003994_300--Hb_027445_030 Hb_003746_010 Hb_003746_010 Hb_003994_300--Hb_003746_010 Hb_001049_150 Hb_001049_150 Hb_003994_300--Hb_001049_150 Hb_000399_060 Hb_000399_060 Hb_003994_300--Hb_000399_060 Hb_008406_180 Hb_008406_180 Hb_002400_320--Hb_008406_180 Hb_005977_100 Hb_005977_100 Hb_002400_320--Hb_005977_100 Hb_000212_120 Hb_000212_120 Hb_002400_320--Hb_000212_120 Hb_005015_060 Hb_005015_060 Hb_002400_320--Hb_005015_060 Hb_004531_100 Hb_004531_100 Hb_002400_320--Hb_004531_100 Hb_000703_100 Hb_000703_100 Hb_002400_320--Hb_000703_100 Hb_000359_310 Hb_000359_310 Hb_009661_030--Hb_000359_310 Hb_009661_030--Hb_005800_030 Hb_004129_140 Hb_004129_140 Hb_009661_030--Hb_004129_140 Hb_003878_200 Hb_003878_200 Hb_009661_030--Hb_003878_200 Hb_019181_030 Hb_019181_030 Hb_009661_030--Hb_019181_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.02121 1.13992 1.79232 5.1062 0.815521 1.96775
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.87859 1.63623 0.59353 0.864566 3.63412

CAGE analysis