Hb_007477_080

Information

Type -
Description -
Location Contig7477: 68294-74577
Sequence    

Annotation

kegg
ID rcu:RCOM_1723200
description hypothetical protein
nr
ID XP_002521158.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S589
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1723200 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56716: 68154-74550 , PASA_asmbl_56717: 68231-74550 , PASA_asmbl_56719: 70266-70499
cDNA
(Sanger)
(ID:Location)		 021_N19.ab1: 74219-74477

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007477_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006816_390 0.0711453683 - - protein phosphatase, putative [Ricinus communis]
3 Hb_001100_050 0.0727950361 - - PREDICTED: glycoprotein 3-alpha-L-fucosyltransferase A-like [Malus domestica]
4 Hb_001862_190 0.0727995803 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 isoform X2 [Jatropha curcas]
5 Hb_033153_050 0.0747198069 transcription factor TF Family: VOZ conserved hypothetical protein [Ricinus communis]
6 Hb_000134_090 0.0748672419 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial [Jatropha curcas]
7 Hb_000699_140 0.0777566738 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]
8 Hb_000020_190 0.0780148851 - - hypothetical protein RCOM_0452240 [Ricinus communis]
9 Hb_006951_020 0.0839575703 - - Rop3 [Hevea brasiliensis]
10 Hb_003641_050 0.0849119096 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic [Jatropha curcas]
11 Hb_000322_100 0.0871845655 - - PREDICTED: casein kinase I isoform delta-like [Jatropha curcas]
12 Hb_005662_030 0.0876132774 - - protein with unknown function [Ricinus communis]
13 Hb_029920_050 0.088369515 - - PREDICTED: putative HVA22-like protein g [Jatropha curcas]
14 Hb_003502_080 0.0890243009 - - vacuolar protein sorting, putative [Ricinus communis]
15 Hb_007336_020 0.0895230929 - - Mannose-P-dolichol utilization defect 1 protein, putative [Ricinus communis]
16 Hb_002681_050 0.0902126097 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
17 Hb_001369_180 0.0912861991 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
18 Hb_005306_110 0.0952151311 - - casein kinase, putative [Ricinus communis]
19 Hb_000481_040 0.0958660659 - - developmentally regulated GTP-binding protein, putative [Ricinus communis]
20 Hb_006922_100 0.0964014389 - - PREDICTED: uncharacterized protein LOC105645470 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007477_080 Hb_007477_080 Hb_006816_390 Hb_006816_390 Hb_007477_080--Hb_006816_390 Hb_001100_050 Hb_001100_050 Hb_007477_080--Hb_001100_050 Hb_001862_190 Hb_001862_190 Hb_007477_080--Hb_001862_190 Hb_033153_050 Hb_033153_050 Hb_007477_080--Hb_033153_050 Hb_000134_090 Hb_000134_090 Hb_007477_080--Hb_000134_090 Hb_000699_140 Hb_000699_140 Hb_007477_080--Hb_000699_140 Hb_000034_050 Hb_000034_050 Hb_006816_390--Hb_000034_050 Hb_006816_390--Hb_000134_090 Hb_002529_060 Hb_002529_060 Hb_006816_390--Hb_002529_060 Hb_006816_390--Hb_001100_050 Hb_000042_270 Hb_000042_270 Hb_006816_390--Hb_000042_270 Hb_001100_050--Hb_000699_140 Hb_000620_010 Hb_000620_010 Hb_001100_050--Hb_000620_010 Hb_003641_050 Hb_003641_050 Hb_001100_050--Hb_003641_050 Hb_000072_220 Hb_000072_220 Hb_001100_050--Hb_000072_220 Hb_001862_190--Hb_033153_050 Hb_001862_190--Hb_000134_090 Hb_006922_100 Hb_006922_100 Hb_001862_190--Hb_006922_100 Hb_001322_190 Hb_001322_190 Hb_001862_190--Hb_001322_190 Hb_005662_030 Hb_005662_030 Hb_001862_190--Hb_005662_030 Hb_005306_110 Hb_005306_110 Hb_033153_050--Hb_005306_110 Hb_007894_140 Hb_007894_140 Hb_033153_050--Hb_007894_140 Hb_001635_170 Hb_001635_170 Hb_033153_050--Hb_001635_170 Hb_029920_050 Hb_029920_050 Hb_033153_050--Hb_029920_050 Hb_033843_010 Hb_033843_010 Hb_033153_050--Hb_033843_010 Hb_002030_030 Hb_002030_030 Hb_000134_090--Hb_002030_030 Hb_004096_030 Hb_004096_030 Hb_000134_090--Hb_004096_030 Hb_004934_090 Hb_004934_090 Hb_000134_090--Hb_004934_090 Hb_000134_090--Hb_006922_100 Hb_004724_200 Hb_004724_200 Hb_000134_090--Hb_004724_200 Hb_000699_140--Hb_000620_010 Hb_000699_140--Hb_001862_190 Hb_000020_190 Hb_000020_190 Hb_000699_140--Hb_000020_190 Hb_000512_060 Hb_000512_060 Hb_000699_140--Hb_000512_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.5993 11.5352 9.96779 14.4942 17.5963 31.5088
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.0075 13.308 19.3271 7.76788 9.62038

CAGE analysis